LOCUS AK070524 4109 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023055G02, full insert
sequence.
ACCESSION AK070524
VERSION AK070524.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 4109)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..4109
/clone="J023055G02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 112..570
/db_xref="Osa1:LOC_Os07g07240"
/db_xref="RAP-DB:Os07g0166800"
/note="(RAP Annotation release2) Rad6 (Ubiquitin carrier
protein)"
/note="(Rice Genome Annotation Project)
ubiquitin-conjugating enzyme E2-17 kDa, putative,
expressed"
/note="mapping to R07-TIGRv4S1-000147R (Chr.7: short
arm=3584406, long arm=3592138, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG92009.1"
/translation="MSTPARKRLMRDFKRLQQDPPAGISGAPHDNNIMLWNAVIFGPD
DTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDV
AAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRKVREIVEQSWTAD"
BASE COUNT 1120 a 866 c 912 g 1211 t
ORIGIN
1 gtcacgattc tctcagagag agagagagag agagagaggg gactcagcga gcggtgggcg
61 agagggggag atcgaaaccc tagctagggt ttgcgcgcgg cggcggcggg gatgtcgacg
121 ccggcgagga agcggctgat gcgggacttc aagcggctgc agcaggaccc ccccgcgggg
181 atcagcggcg cgccgcacga caacaacatc atgctctgga acgccgtcat cttcgggccg
241 gatgatacgc cgtgggacgg aggcacgttc aagcttacct tgcagtttac agaagattat
301 cccaacaagc cgccgactgt tcggtttgtt tctaggatgt tccacccaaa tatttatgca
361 gatggaagca tctgcttgga tattctacag aaccagtgga gccctatata tgatgttgct
421 gccatattga cttcaattca gtctttgctg tgtgatccaa accccaactc tccagcaaac
481 tcagaagctg ccagactgtt tagtgagaac aagcgagagt acaaccgcaa ggttcgtgag
541 atcgtggagc agagctggac agctgactag ggcatgcagc agggcaacgg gtggtatcca
601 ccatgccaga aagatgcaat aagcaaccgt gaaaaacctg tgcgtttctg gctctccaga
661 tttgctgtca tcttaaaaca ttataagatc tccagtgatt gcttgtagtc cgttgatgtt
721 tttgtgttcc catgtcccag ttactcttgg ctgcttttat gtagtggtgt tgacctctca
781 tgcactaggg cattctgctc atgtaaaaag gggattatca tcataatatg tgaatggaag
841 cgaaatgggt catgagattt gagtctgctt gcacaatgca gtttgtctgc atgatccttt
901 tgccatgtag tttggctgtt ggtgctgtcc tatgcacatg cttaatattc tctgccgttt
961 ggattttttg caacattttg tatttttgta ggaacagaaa aaaaaattcc cgtgatactt
1021 ctcatgatac aaatggtacc aaactgaaat ttatcgttcc tcgagtgatg ctttcgtatg
1081 gtataaagaa gggtttttag gcccctttga attggaggat tgtgaatttt ggaggattta
1141 atgtcctaag gattttttcc tatgaaacct ttgattcata ggaaagtata ggaaattttc
1201 tttaggattg cattcctata gcccaatttc ataggaaaat aagtaagagg tttaacctct
1261 tggaaactat cctttgcttt gtttgttttc tatggtgata ttttctgtgt tttccattcc
1321 tgtagaatta ggaaaacatg ccacatcaat tcctacgtcg ggtttttagg cccctttgaa
1381 ttggaggatt taatgtccta aggattcttt cctatgaaac ctttgattca taggaaagta
1441 taggaaattt tctttaggat tgcattccta tagcccaatt tcataggaaa ataagtaaga
1501 ggtttaacct cttggaaact atcctttgct ttgtttgttt cctatggtga tattttctgt
1561 gttttccatt cctgtagaat taggaaaaca tgccacatca attcctacgt ttttcctatt
1621 cctttgtttg tttcctatgg tgatattttc tgtgttttcc attcctgtag aattaggaaa
1681 acatgccaca tcaattccta cgtttttact attcctgtgt tttttctatt ctgcgtttca
1741 aaggggccct aggtaaagta gtgctcttga ttggtgtcgg gggcctgggg atatctcctt
1801 ttacttgtcc atgtaaaggt ctaaaacaac aaatgcgata catggtattg acaccattga
1861 cacaatgata accgaagtgc ccctacagag gacatgccat aaacgaggta ctgaaccatg
1921 attacattta gacctagatt cgtagtgaga catttatagt cctagattca aagtgggaaa
1981 aattacaaaa ttacagttgt gcttagcttc ttacatattc aaaagaaaca tatagaaaag
2041 gcggtaaaaa aaaagaagat aaaaaaaatg tgaagaaagt aaaagagccc actgacttct
2101 actggtctac accaagaagg ccctatacac atcttatctt atagggtagt agtacaccat
2161 atgccagttc cagtctagct tcagctgcag ctgccatctg aattgttctc tcatgttcgg
2221 ttcttgaaag atcacactgc aaaatgtttg cttcatgtaa tgtttcccgc tgaattgccg
2281 ttgctgttct tgcctcaacc tagaaatcca agaaaacaca agaaaatatc atctcagatc
2341 atagctgaat gcataacatt tccctcaact atcagccatg gatgatcaga gcatgatagt
2401 tcagatgctc aaagtgcaag gtttggtttg tttggtgata gatacctgca ggctatgatg
2461 gagtatcatc tacagatcta ctggtcgtct tctaagtctc tggggatctg cgacggcgac
2521 agcggcgact cctcgctgct ccgggagtcc cctctccagt catcctgcac ctgcgcggcg
2581 aactgcaggt tccacagcac gtcctccacc gacggcctct gcaccgcctc cttggccagg
2641 cacctcaggc agatctccat caccgtcttc accgactcgt cggagcaccc cttgctcacc
2701 gccgggtcca caaagctcct cctcttcgcc gtcccctccg ccgtcagcgc cgattgcagc
2761 tgcagaaaga acacaggtga gtttcttttt ttctttttca gaactttcag aagtggacag
2821 tgtgatggta gtatctgaag tctcatgaaa aattcagttc agtttcagtc tttggaggga
2881 gtttgtgttg cacctgttct ttcattatct ccacctcgta gatggatgtg atgggcctgc
2941 ctgagataac ctcgagtagt atcacgccga aatcgaagat gtcgagctta tcaccgttcg
3001 gtacactgcg agaagaaatt tgcaacagaa aagttcttaa gaaaaccagt tgcttttagt
3061 ataatataca tagattctgc tgtaaggtga tttgtcaagt acctatcaga tggatacttg
3121 ttgccagatc ctccctgaat tcatccacaa aagatgatat aaaacaacaa tgttagttca
3181 gggttcagac agtgccaact caaaattcag cggtaagttt acatgatcag agtttcctga
3241 atcatacctc ggatttcatg gtttcagata ggatggggat attgtagctg cctattttgg
3301 caacaagatt ctggtctaga agaatgttgg tgatcttcag attattcgca aataggccag
3361 gtatgatccc tccatgcaag aattgaattc ctttggcaac accaatggct gttgatatcc
3421 tctgcaccca ggtgagcttt ctcccttctg ttccttctga agtcaaaagt atcaacaagt
3481 tcagtgacat tcagctaacc gagtaactga ttattggaga ccgatttcag gagaagatgg
3541 taaacttacg tgaaattctg cctctcaggt tgccattctg aacgtattcg aagacgagat
3601 acaattgcgt gatggtggaa tcgtcgagat tgtattcgaa gcagtgtcca agtgcactga
3661 ccaagtgcct gtgcctgagc ttggagatca tctcaatgtg gtgattgaag ctctgggaag
3721 tctggctcct cttcaccttc agagacctga ttgtcaccgg agttccattg cttagccttc
3781 ctcggtacat ctgacagtaa aaaagagcaa accattttag acatggagca caacaatttt
3841 agttgcaaac ttgctatgtt acaacttgca catgcctcaa aagaaaaggt gattcttgaa
3901 tagattgaaa aatatgtatg gaaagatggc tttggtactc tggcaagaaa aaagagagaa
3961 agcttgtaat aactataaaa actgttctct ttaatcttta taccccaatt gtaatctagc
4021 agtagtattt aactcattag aataatcaga aaagtgaatg ggggcataaa gcatactgtc
4081 aattaacaag aacatgaaaa attaggttc
//