LOCUS AK070509 1870 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023054E18, full insert
sequence.
ACCESSION AK070509
VERSION AK070509.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1870)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1870
/clone="J023054E18"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 196..1542
/db_xref="Osa1:LOC_Os06g05260"
/db_xref="RAP-DB:Os06g0144900"
/note="(RAP Annotation release2) Similar to Pectate lyase
homolog (EC 4.2.2.2)"
/note="(Rice Genome Annotation Project) pectate lyase
precursor, putative, expressed"
/note="mapping to R06-TIGRv4S1-000132F (Chr.6: short
arm=2371992, long arm=2373947, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG91996.1"
/translation="MAGSVVTRSPLCSILFYVLATAAAATATATLVGNITADEEYWAK
RSEVARSFNRAAYVSDPVAVLNRFNEDVLNTTTATAAAARRSLMRRYRRRGPCTVTNP
IDLCWRCRKNWASRRKRLAKCAMGFGHKATGGLAGKIYIVTDAGDEHLVIPRRGTLRH
AVIQERPLWIVFARSMVIRLAKELIVTSDKTIDGRGAQVHVTGAQITVQAVSNVIIHN
LHIHNSVPRSGGLIRDSMHHFGIRGESDGDGISVMGSSNIWIDHVSMSNCSDGLIDIT
DGSTAITISNSHFTKHDHVMLFGARDDSPKDKIMQVTLAFNHFGKGLVQRMPRCRFGF
FHMVNNDYTHWLMYAIGGNMNPTIISQGNRFRASDDMKLKEVTKREYTSYDEYKEWVW
KSQDDLFLNGAFFNESGGRNERRYNRLDLIQARNGRYVGRMTRFAGTLPCRVGKKC"
BASE COUNT 394 a 584 c 541 g 351 t
ORIGIN
1 ttgtcggcgg ccggctcacc tctctccgcc gcccggcccg ctcgctgatg ctgccgccgc
61 cggcttcacg cgggaagaag tctcagaaac cctaggcgaa agccgccaca catttcctga
121 gtcctctttc ccgcggtgcg gcggccggcc ggggcggcgc tccatacacc catcgatcgt
181 tctgaaccag caggcatggc gggctccgtc gtgacgagga gcccactgtg ctccatcctc
241 ttctacgtcc tcgccacggc cgccgcggcg acggcgacgg cgacgcttgt gggcaacatc
301 accgccgacg aggagtactg ggccaagcgc tccgaggtgg cgcgctcgtt caaccgcgcc
361 gcctacgtca gcgaccccgt cgccgtgctg aacaggttca acgaggacgt gctgaatacc
421 acgacggcga cggcggcggc ggcgcggcgg tcgctgatga ggaggtaccg gcgtcgtggc
481 ccgtgcacgg tgacgaaccc gatcgacctg tgctggcgct gccgcaagaa ctgggcgagc
541 cgtcgcaagc ggctggccaa gtgcgccatg gggttcggcc acaaggccac cggcgggctc
601 gccggcaaga tctacatcgt gacggacgcc ggcgacgagc acctcgtcat ccctcggcgg
661 ggcacgctcc ggcacgccgt gatccaggag cggccgctgt ggatcgtctt cgcgcggagc
721 atggtgatca ggctcgccaa ggagctcatc gtcaccagcg acaagaccat cgacggccgc
781 ggcgcgcagg tgcacgtcac cggcgcgcag atcacggtgc aggcggtgag caacgtcatc
841 atccacaacc tccacatcca caactccgtg ccgcgctccg gcggcctcat ccgcgactcc
901 atgcaccact tcggcatccg cggcgagagc gacggcgacg gcatctccgt catgggctcc
961 agcaacatct ggatcgacca cgtctccatg tccaactgct ccgacggcct catcgacatc
1021 accgacggct ccaccgccat caccatctcc aactcccact tcaccaagca cgatcacgtg
1081 atgctgttcg gtgcacgcga cgactcgccg aaggacaaga tcatgcaggt aacgctggca
1141 ttcaaccact ttggcaaggg gctcgtgcag aggatgccga ggtgcaggtt tggattcttc
1201 cacatggtga acaacgacta cacgcactgg ctcatgtacg ccatcggcgg caacatgaac
1261 ccgacgatca tcagccaggg gaacaggttc agggcaagcg acgacatgaa gctcaaggag
1321 gtgaccaaga gggagtacac gagctacgac gagtacaagg agtgggtgtg gaagtcgcag
1381 gacgacctct tcctcaacgg cgccttcttc aacgagtccg gcggccggaa cgagcgccgg
1441 tacaaccggc tcgacctcat ccaggccagg aacggccgct acgtcggccg gatgaccagg
1501 ttcgccggca cgctgccatg ccgtgtcggc aagaaatgct aggcatgcat atgcttgcta
1561 ctcaccgtgt gcgtgccaag gacatcatca tgatgatgca gatgcagaga ggagaggaat
1621 tttccatgac gatcgcatgg atatttatat gtatgaatta tatttcatat atataatatg
1681 gttcggcagt aatgcaatca tttgcaaaat tgcataagcc ttagagaaca gggttcgaaa
1741 ttttggacca aaattttggt catttcggtc ctctccgata cgatattact tcgccgaaat
1801 ttttcatttt ttcaattttt tcatgaattt tggtaatatt tgttcaaatt gaactaaatt
1861 ttgtgatatc
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