LOCUS AK070466 1612 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023052D02, full insert
sequence.
ACCESSION AK070466
VERSION AK070466.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1612)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1612
/clone="J023052D02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 93..1082
/db_xref="Osa1:LOC_Os03g21800"
/db_xref="RAP-DB:Os03g0336200"
/note="(RAP Annotation release2) Transcription factor
RF2b"
/note="(Rice Genome Annotation Project) transcription
factor RF2b, putative, expressed"
/note="mapping to R03-TIGRv4S1-000779F (Chr.3: short
arm=12430996, long arm=12435162, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG91971.1"
/translation="MQEPKHTDPAAMRGAHHRRARSEVAFRLPDDLDLGGGGAGAFDE
IGSEDDLFSTFMDIEKISSGPAAAGGSDRDRAAETSSPPRPKHRHSSSVDGSGFFAAA
RKDAAASLAEVMEAKKAMTPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITEL
ERKVQTLQTEATTLSAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQ
ELERLKLATGEMTNSNETYSMGLQHVPYNTPFFPLAQHNAARQNGGTQLPPQFQPPRP
NVPNHMLSHPNGLQDIMQQDPLGRLQGLDISKGPLVVKSESSSISASESSSTF"
BASE COUNT 364 a 453 c 424 g 371 t
ORIGIN
1 gggagccgaa cactcgctgg cgggcgcgcg cgcgcgcagc cggggaaccg ggggggagac
61 agggtggtgg tggtgaggcg ggggcgagcg caatgcagga gccaaagcac accgatccgg
121 cggccatgcg cggggcgcac caccgccggg ccagatctga ggtcgccttc cgcctgcccg
181 acgacctcga cctcggcggc ggcggcgcgg gggcgttcga cgagatcggc tccgaggacg
241 acctcttctc caccttcatg gacatcgaga agatctcctc cggccccgcc gccgcggggg
301 gctccgaccg ggaccgcgcc gcggagacgt cctcgccgcc gcgccccaag caccgccaca
361 gcagctccgt cgacggctcc gggttcttcg ccgccgcgcg gaaggacgcc gccgcatcgc
421 tggcggaggt catggaggct aagaaggcca tgacccccga gcagctctcc gagctcgccg
481 ccatcgaccc caagcgcgcc aaaagaattc tggcgaacag acaatctgca gctcggtcaa
541 aagagagaaa agctcgttac ataacagaac ttgagcggaa ggttcaaact cttcagactg
601 aagccactac tctctcagca caactcacac tatttcagag agacacaact gggctttctg
661 cagaaaatgc agagctcaag atacggttgc aggccatgga acaacaggct caactgcgag
721 atgctctgaa tgatgcacta aagcaggaac tggagaggct taagctcgct actggtgaga
781 tgacaaattc caatgagaca tatagcatgg gactgcaaca tgtcccatac aacacccctt
841 tcttccctct cgcccagcat aatgcagccc gccagaacgg tggaacccag ttgccaccac
901 aattccaacc accccgtcct aatgtgccca atcacatgct atcccatcca aacggtttgc
961 aagatatcat gcagcaagac cctcttggcc ggcttcaggg tttggacatc agcaaagggc
1021 ctctagttgt gaaatcagag agcagctcga tctctgcaag tgaaagcagc agcaccttct
1081 aaccaggcct acccaccgag cccacagttc cattagattc gtttgttcat agcctgacat
1141 cctcgcgctg ctccctgttc tgtaagctta ttatttattc aattcgttcg atttagttga
1201 aattgttcgt aattgcagtg gctgatctat tcccttctgt ggacatgatt cctgtacccc
1261 tcacatccat ttgttttggg ttcatctcct gtgtgctgtg tttgggatta tcagggcacc
1321 aggactggct ttctccgaga atactgtgtt ctttgtggtc gtgtggactt gttcaccatg
1381 gattcaattc aaccttttga aaagatgcat gtattctctg attttttttt ctcagtcatg
1441 tacatgtcac tgttatgcta gtttgattga tgtgtactgt ggaatttgtg gataacaaaa
1501 ggagttaaga ttgggattgc tgtggaacca tctgtatcgt atattcgtat gtgactaatg
1561 ttgggaaatt gttctattct tgttcaccat atgcatgtgg ggtaactttt cc
//