LOCUS AK070404 1722 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023054M07, full insert
sequence.
ACCESSION AK070404
VERSION AK070404.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1722)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1722
/clone="J023054M07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 162..1373
/db_xref="Osa1:LOC_Os02g52360"
/db_xref="RAP-DB:Os02g0761100"
/note="(RAP Annotation release2) Similar to
Cyclophilin-40 (Expressed protein)"
/note="(Rice Genome Annotation Project) peptidyl-prolyl
cis-trans isomerase CYP40, putative, expressed"
/note="mapping to R02-TIGRv4S1-001402F (Chr.2: short
arm=32041896, long arm=32046432, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG91931.1"
/translation="MEGGGEGTTTAAAAAAVAAGKEEEAEVVVVRNPRCYLDVSIGGD
MEGRIVVELYASVAPRTAENFRALCTGEKGVSAATGVPLHYKGSCIHRIVKGFMVQGG
DITAGDGTGGESIYGLNFEDENFVLKHERKGMLSMANAGPDTNGSQFFITTTRTPHLD
GKHVVFGRVIKGMGVVRSMEHVSVGESDRPITDIVIVDCGELPEGASDGVVNFFSDGD
MYPDWPNDLEEKPAEISWWMTAVDSAKSFGNEYFKKKDYKTALKKYRKAMRYLDLCWE
KEEIDEEKSSALRKTKSIILTNSSACKLKLGDLKGALLDADFALREGEGNPKAFFRQG
QARIALNDIDAAVESFKHALQLEPNDGGIKRELAAAKKKIADRRDQERKAFSRMFQPS
GGSEKIDEENN"
BASE COUNT 471 a 346 c 494 g 411 t
ORIGIN
1 gagtacacac aggcgccgtc ccgcaacgac acacacagcc cacgaggcca cgactctctc
61 cctccccctc cccctctccc tcctctcgcc gtgagcggaa cacgaggcaa cgccgccacc
121 tcgagaagcg cgtcgccctc tagggtttta gagcagcagc gatggagggc ggtggggagg
181 gcaccaccac cgccgcggcg gcggcggcgg tggctgcggg gaaggaggag gaggcggagg
241 tggtggtggt gaggaacccg aggtgctacc tcgacgtgag catcggcggg gatatggagg
301 ggcggatcgt ggtggagctc tacgcctccg tggcccctcg cacggcggag aacttccgcg
361 cgctctgcac cggcgagaag ggcgtcagcg ccgccaccgg cgtgccgctt cactacaagg
421 gttcatgtat tcaccggatt gtcaaaggtt ttatggtgca aggtggggat attaccgctg
481 gtgatggaac tgggggagag tcaatatatg gattgaattt tgaggatgaa aattttgtcc
541 tgaagcatga gagaaaaggg atgttatcaa tggctaatgc tggtcccgat acaaatggat
601 ctcagttttt catcactaca acccgaacac cacaccttga tgggaaacat gttgtttttg
661 gaagggttat aaaaggaatg ggggtggttc gctcaatgga acatgtttct gttggagaat
721 ctgaccgtcc aattactgat attgttattg ttgattgcgg agaactacca gaaggtgcca
781 gtgatggagt tgtgaacttt ttcagtgatg gtgacatgta tcctgattgg ccaaatgatc
841 tcgaagaaaa acctgcagaa atttcttggt ggatgactgc tgttgactct gcaaaatctt
901 ttggaaatga atatttcaag aaaaaagatt acaagacagc cctcaaaaag tacagaaaag
961 ctatgagata cttagatctt tgctgggaga aagaagagat agatgaagag aagagctcag
1021 cactacggaa gacaaagtca attatactca caaatagttc tgcttgcaag ctgaagttgg
1081 gagatttgaa aggtgcttta ctagatgcag actttgcatt gcgtgaaggg gagggaaacc
1141 caaaagcttt tttccgtcaa ggacaggcac gcatcgcact caatgatatt gatgctgcag
1201 ttgagagctt caagcatgct ctgcagttgg agccaaacga tggaggaatt aagcgggagc
1261 tggctgctgc aaaaaagaag attgctgaca gacgggatca ggagcggaaa gcattttcta
1321 ggatgttcca accatcagga ggttcagaga agatcgatga agagaataac tgatcggctt
1381 aagttcaacg ttttgtagtt ctcttcatga cacatactgg tgctgcctgg tgaaaaaata
1441 gagttcaggt gatggatgag agagtttttg cataacagaa ggtgatggat gagagagtta
1501 tgcagttttt gcataacaga aggtgatgga tgagagagtt tttgcataac agaaacaact
1561 cccatggttg aaaatagttt tggtcttttg gacaccaagc cttatgtttt gcagtataga
1621 gtttgccaca atgctatcgt aggaaatgtc tggcggattg aattgtcaaa ctcttggaaa
1681 ggccttttga atgaccaatc ctgttaacga aacattgttg gc
//