LOCUS AK070300 2147 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023048N01, full insert
sequence.
ACCESSION AK070300
VERSION AK070300.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2147)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2147
/clone="J023048N01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2147
/db_xref="Osa1:LOC_Os09g39570"
/db_xref="RAP-DB:Os09g0569200"
/note="(RAP Annotation release2) Similar to Beta-amylase
(EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase)"
/note="(Rice Genome Annotation Project) beta-amylase,
putative, expressed"
/note="mapping to R09-TIGRv4S1-000795F (Chr.9: short
arm=22712800, long arm=22716060, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 495 a 480 c 571 g 601 t
ORIGIN
1 ttggggctaa tcataataat catgatttct tctcctgcgc tcttcttcct cctccagcca
61 ggccgcccct ccatcgccgc gccgccgctc ccctcctcgc cggcgcctcc cctccgcggc
121 atctccatct cccccgtcgc cgcccgcccc atctcctccc tccgctcctc ctcctccatc
181 aggatcatct cgccgccgca cgccctcccc gacccgctcc tctccctccc gtccatggac
241 ccccaagagg tgcccgatct gctgcccccg cgcccaccgg agcgcgactt cgccggaacg
301 ccatacgtcc ccgtctatgt catgctcccg cttggagtgg tcaatggtaa tggcgaggtg
361 gtcgacgccg acgtcttggt gggccagctt cgggtactca aggctgccgg cgtcgatggg
421 gtcatggtcg attgctggtg ggggaatgtc gaggcccaca ggccgcagga gtacaattgg
481 accggttaca agcgactctt ccatatgatc agggagctca agctcaagct gcaggtggtc
541 atgtcattcc atgagtgtgg aggcaatgtt ggagatgatg tgtctattcc tctcccacat
601 tgggtaacag agatcggaag aagcaatcca gatatctact tcaccgacag ggctggcagg
661 cgtaacacgg agtgcctttc atggggcatt gataaagaaa gggttcttca aggacggaca
721 ggggtcgagg tattttgact acatgagaag cttccgagta gaatttgatg aatattttga
781 ggatggtatc atttcagaaa ttgagattgg gctaggggct tgtggagagt tgaggtatcc
841 atcttatcca gcaaaacatg ggtggaaata ccctggcatt ggagaatttc agtgctacga
901 cagatactta cagaaaagtt taagaagagc tgcagaagca cgaggacata ccatatgggc
961 aagagcgcca gacagtgcag gccattataa ttctgagcca aatctgactg gatttttctc
1021 tgacggagga gattatgata gctactatgg tcgttttttc ctcaattggt attcccaggt
1081 gttggtggat catgctgacc gtgtattgat gttagccagg ttggcttttg aaggttcaga
1141 tattgctgtt aaggtttcag gtgtacactg gtggtacaaa actgccagtc atgctgctga
1201 attgactgct gggttttata acccatgcaa ccgtgatggt tatgcctcaa ttgctgctgt
1261 cctgaaaaaa catggtgcag ctttgaactt tacatgtgtt gaactgcgca ctatggatca
1321 gcatgaggta tttcctgagg cctttgcaga tccagagggc cttgtatggc aggtgctaaa
1381 tgctgcatgg gatgctggca taccagtagc tagtgagaat gctctgcctt gctacgatag
1441 agatggcttt aacaaaattt tggagaatgc aaagccactg aatgatccag atgggaggca
1501 tttactagga ttcacgtacc tgaggctcac caaagtcctc ttcgagagag ctaatttttt
1561 ggaatttgag cgtttcgtta agagaatgca tggtgaagca gttctcgatc tacaggtata
1621 agttgtgttc agggttctta catacataca tatatataca tgccattgta attggcatag
1681 gccttatggc ttatgatggg ggaacagaga tgccattttt gtttcgtagg ttgttgtagt
1741 ataccatcag cagatttttg aactatagag ggtttggctc catggtgtaa agcataccct
1801 tggcaaagag ttgtcatgca gaaaattgat ggtttcattc ggaatgaggt tggaagcagg
1861 tgtatttctt tcgatgcggc agacatattt gatttgtcat gagatgagga ttgggtgagc
1921 aggtggtatc cttctgaaag atttgaggct gtattgaaga gaatgtgctg atgcatgttt
1981 atcatggagc aagcgacatt aatggagtta gcaaaggttc tcgcggtgta tgtgtttgta
2041 tttgttggtg gaatgtcact cgaggatctt ggctgtatac aatacataca tgtgcttttt
2101 tttgggtctt ttctacagtg tatgagaaat gcatgtttct tactgcc
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