LOCUS AK069976 1861 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023035N02, full insert
sequence.
ACCESSION AK069976
VERSION AK069976.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1861)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1861
/clone="J023035N02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 131..1636
/db_xref="Osa1:LOC_Os02g38040"
/db_xref="RAP-DB:Os02g0593600"
/note="(RAP Annotation release2) Leucine-rich repeat,
typical subtype containing protein"
/note="(Rice Genome Annotation Project) protein binding
protein, putative, expressed"
/note="mapping to R02-TIGRv4S1-000917F (Chr.2: short
arm=22972960, long arm=22975584, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG91707.1"
/translation="MDPTPQSHPILAYVLSRLPSLLPVSPSLSTPRARDIEQPSPRAP
SGAAEFDLVSRMPGLRHPSVLSAMTRAVADVSSARDALRLLGPRPDHELVDSARAFLR
SHAAEEAEEEEEDEKVAKSREVVRLDEAHESYGGLLREAEERLDRVYRTAMRGRDMQV
VAAAHGGGGEEEAGVVDDEVVRVLRDAEEGKAVERLLLADRQLRHLPEQLGRIRGLLV
LDVSRNQLKNVPDAIGGLEHLEELRLASNALVSLPDSIGLLTSLKILDVSGNKLRSLP
DSISKCRSLVELDVSYNVLSYLPTGIGQEMARLEKLWVHLNKLRSLPSSVCEMRSLRL
LDAHFNQLRGLPAGIGRLAALESLNLSSNFSDMRDLPASFGDLLGLRELDLSNNQIHA
LPDCFGRLQRLERLRLDQNPLAVPPKEVVAGGVGAVKEYMARRWRDARAEEERRGSAV
AESPRVSTPKEWLVRSVSSLGSWVSDVTRYGAGQDKAAAEEEEDAYLQQNL"
BASE COUNT 281 a 633 c 623 g 324 t
ORIGIN
1 ttctttttcg ccacccgatc cggcaacaac aacgtacgta acctcctctc tctctctctc
61 tctctctccc cttccagccg cgcgcgcgca cgcacgccgc cgtcgtgacg tcgccgtcgc
121 ggtcgccgcc atggatccga cgccgcagtc gcacccgatc ctggcgtacg tgctgtcgcg
181 gctcccgtcg ctgctgccgg tgtcgccgtc gctgtccacc ccgcgcgcgc gggacatcga
241 gcagccgtcc ccgcgggcgc cgtcgggcgc cgcggagttc gacctcgtca gccgcatgcc
301 ggggctccgc cacccgtccg tcctctccgc catgacgcgc gccgtcgccg acgtctcctc
361 ggcgcgcgac gcgctccgcc tcctcggccc ccgccccgac cacgagctcg tcgactccgc
421 ccgcgccttc ctccgctccc acgccgccga agaggccgaa gaggaggagg aggacgagaa
481 ggtggcgaag agccgggagg tggtgcggct ggacgaggcg cacgagtcgt acggtggctt
541 gctgcgggag gcggaggaga ggctggatcg cgtgtaccgg acggcgatga gagggaggga
601 catgcaggtg gtggccgcgg cgcacggcgg tggcggggag gaggaggccg gggtggtgga
661 cgacgaggtg gtgcgggtgc tccgggacgc ggaggaaggg aaggcggtgg agcgcctcct
721 cctcgccgac cggcagctcc gccacctgcc cgagcagctc ggccggatcc gcggcctcct
781 cgtcctcgac gtctcgcgaa atcagctcaa gaatgtccca gatgccatag gcgggctcga
841 acacctggaa gagcttcgcc tcgcttccaa cgcgttggtc tccctcccgg actccatagg
901 cctcctcacc agcctcaaga tcctcgacgt ctcgggcaac aagctgaggt ctctccccga
961 cagcatctca aaatgcaggt cgctggtgga gctggacgtg agctacaacg tgctgtcgta
1021 cctcccgacg gggatcgggc aggagatggc gaggctggag aagctgtggg tgcacctgaa
1081 caagctgcgg tcgctgccgt cgtcggtgtg cgagatgcgg tcgctgcgcc tcctggacgc
1141 gcacttcaac cagctccggg ggctccccgc ggggatcggg aggctggcgg cgctggagtc
1201 gctcaacctc agcagcaact tcagcgacat gcgcgacctc ccggcgtcgt tcggggacct
1261 gctcggcctg cgcgagctcg acctcagcaa caaccagata cacgcgctcc cggactgctt
1321 cggccgcctc cagcgcctcg agcggctccg cctcgaccag aacccgctcg ccgtgccccc
1381 caaggaggtg gtggccggcg gcgtcggcgc cgtcaaggag tacatggcca ggcggtggcg
1441 cgacgcccgc gccgaggagg agcgccgggg cagcgccgtc gccgagagcc ccagggtgtc
1501 gacgcccaag gagtggctgg tgcgcagcgt ctcgtcgctg ggcagctggg tgtccgacgt
1561 cacgaggtac ggcgccggcc aggacaaggc agcggcggag gaggaggagg acgcctacct
1621 ccagcagaat ctgtgatcgg agattacagc atttgcttgc tccggtgctt tcatccgtat
1681 gtacagaaga actactgcag accgtcgccg cgtcgttcgt ttcgcatcag ccgtgtgttt
1741 gtgtgtgttt accttcgctg attccttacc atttaccatt tttgttgttg ttgttttaac
1801 cgttttgctg tttaaaactt ttaaacccag gttactggac cacagtgcct gtgtgtttgc
1861 t
//