LOCUS AK069928 1998 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023036P06, full insert sequence. ACCESSION AK069928 VERSION AK069928.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1998) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1998 /clone="J023036P06" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 178..1491 /db_xref="Osa1:LOC_Os03g27960" /db_xref="RAP-DB:Os03g0397400" /note="(RAP Annotation release2) Similar to Low affinity calcium transporter CAX2 (Fragment)" /note="(Rice Genome Annotation Project) vacuolar cation/proton exchanger 2, putative, expressed" /note="mapping to R03-TIGRv4S1-000930F (Chr.3: short arm=16039945, long arm=16043851, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG91683.1" /translation="MMGAEKAEGMEELELEEGGGSPSPSPMTAAGKMQALDFEHIGSL AAVAESLSTGSKWRRALTSVRVVILQAKINVLLPFGPLAVMLHYLSANHQGWVFLFSL IGITPLAERLGYATEQLALYTGPTIGGLLNATFGNATEMIISLYALKNGMIRVVQQSL LGSILSNMLLVLGCAFFAGGLVHPSRDQVFNKASAVVNSGLLLMAVLGLMFPAVLHFT HSEVQYGKSEVSLSRFSSCIMLVAYASYLFFQLKSQRSLYSPIGEQEEEVTEDEEEEK EITQGEAICWLFVLTIWISILSGYLVDAIQGASESLNMPVAFISVILLPIVGNAAEHA SAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVIGWIMGQQMDLNFQLFETATLFI TVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDPDSSNNK" BASE COUNT 453 a 461 c 539 g 545 t ORIGIN 1 ggttcgtcgt cgtcgtctcc ctcgccggcc gcgacgccac gcaccaattc tccgattcgt 61 cgaggagccg aggaggaatc ccagcctcga gtcgcgcccc tgatcctcca ggctccatcg 121 atccgaggag gaggggcgcg cgcgggattc cgtcgtcgga ttgggttggg ttcgcggatg 181 atgggggcgg agaaggcgga ggggatggag gagctggagc tggaggaggg cgggggctcg 241 ccgtctccgt cgccgatgac ggccgccggg aagatgcagg cgctggactt cgagcacatc 301 gggtcgctcg ccgcggtggc ggagtcgctc tcgacgggga gcaagtggcg gagggcgctc 361 accagcgtgc gcgtcgtcat cctccaggcc aagatcaacg tcctcctccc cttcggcccc 421 ctcgccgtca tgctccacta cctctccgcc aaccaccaag gatgggtttt ccttttcagc 481 ttaatcggca tcacgccctt ggctgagaga ttgggatatg cgaccgagca gcttgctctc 541 tacacgggtc cgacaattgg ggggctgttg aatgctacct ttggcaatgc gactgagatg 601 attatctcgt tgtacgcatt gaaaaacggg atgatccgtg tcgtccagca atcgctacta 661 ggctctatac tgtcaaacat gctgttggtt ctcggttgtg ctttcttcgc tgggggtctt 721 gtccatccca gcagggacca ggtcttcaac aaggcgtcag ccgttgtaaa ctcaggattg 781 cttttgatgg ctgtcttggg tctaatgttt ccagcagtac ttcactttac acattctgaa 841 gtgcagtatg gaaaatccga agtttccctt tcaaggttta gtagctgcat catgcttgtg 901 gcatatgcaa gctatctgtt ttttcaacta aagagccagc gaagtctgta cagtccaatt 961 ggtgaacagg aagaagaagt aactgaggat gaggaggaag aaaaggagat aacacagggt 1021 gaagctatct gttggctttt tgtgttgact atttggattt cgattctctc tgggtacctg 1081 gtagacgcca tacagggggc ctctgaatca ttaaacatgc cagtggcctt tattagtgtt 1141 attctgcttc caatcgtggg aaatgctgct gagcacgcaa gtgccattat gtttgccatg 1201 aaagacaaac ttgatattac acttggagtt gccataggat cgtcaacaca gatctccatg 1261 tttgtgatcc cattctgtgt ggtaattggc tggataatgg gccaacaaat ggacttgaat 1321 tttcaactgt tcgagacagc aactcttttt ataacagtac tggtggtggc atttatgttg 1381 caggaaggaa catcgaacta ttttaaaggc cttatgctta tcttatgcta tctcatagtt 1441 gctgcgagct tcttcgtaca tgttgatccc gattcaagta acaacaagtg aaagatccgc 1501 aacaatttgt ggaatgataa gggatgagca tattggaatg tcagcactag caaacagcag 1561 tatttgcaac atatcatctg tccgagtcct gatttttgac ggcctatacc tgtcagcagt 1621 atctcacacg gaggcttcaa cttccggcct ggagttgcaa gggccctgat gcggcttttt 1681 taagatagcg acggcatcgc cctttgattg agaacctgta actttattat gggatagtgt 1741 aatgtgccaa gatcactagt ctgtatttgc tgaagaaaca cttgtcgcga tttttgatga 1801 tgttgttgta ctgatgccaa tgaactggct atagcgttgc agttcaaggg acactggata 1861 actggactac atagtccata cacatttcca aacggtgcca gttgtgcaac atgatttgtc 1921 actgcacata atttatttgt ctaggatggg ttgctcgttt ttgaatgctt gcttgcttat 1981 aagagaacag gtttctag //