LOCUS AK069918 1983 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023039A19, full insert
sequence.
ACCESSION AK069918
VERSION AK069918.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1983)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1983
/clone="J023039A19"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1983
/db_xref="RAP-DB:Os02g0314400"
/note="(RAP Annotation release2) Non-protein coding
transcript, uncharacterized transcript"
/note="mapping to R02-TIGRv4S1-000572F (Chr.2: short
arm=12450778, long arm=12453985, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 544 a 399 c 391 g 649 t
ORIGIN
1 gataggccat ccagactatc ttgacatatg tccgtagccc agctctctcc tcgcttatct
61 ctgatccttc tcctacctgc tgcccccagg taatgtgtct gcacattctt tgtgtgtgta
121 catgaagttt gagaggcgtt ttgctcaaga ccgcgcaacg attccatatg acaccgcatc
181 gttgtccatg cctatcatgt tcatccagag cccctgttga tcttcagata agagaaaagc
241 tcaaaattaa agaaggcttg tttattgatc atgtcaagga taggtatcga cggcgatgcg
301 ctggctatgg ccatggttgt gcggttcttg cgcaataacg ttttgatctc gatctcctct
361 cctctctcca aagtttttct ttctttactc ctctgatgga acaatgcatg catttactga
421 gtttttgtct cctgttcttc ctcgtctgca tgttcttgaa tggtttggtc gctcttattc
481 ttctgtgatt tccttgtcca tcattatctc agggcatgca tgaaagctct ataaattaag
541 atggaacctt ttcttttagt tttgttgatg atgactaatt tggtttgttg ctagctacta
601 gctgttgttt cctgtctgaa aactatgaag ctatcttgta aggtaggtaa gacgaatgcg
661 gaggttctta ctacttcggc ccttgcctag agcttcagaa atataaacta agattaccat
721 gaagaacagg tgtgtgcaac tttatttatg gtattgatga aaactcaatc tagtaaacat
781 catgtatgat ccagtagatc gatcgattag attcatcgta cctgaatcta tttttgctta
841 ccgtactgta gctagtcttt caccttcagt ctttgcaagt tatatttttt tatactaggt
901 ttcgttcttg catacttgca aatgctcttg taattgagtt ttcagagttc tccacttgca
961 ataacaaata ttttggttgt ctttccatga agcagatcag atggctagat agatggtaaa
1021 tgatctgaaa aatataaaag aagattacag gcactgtttg acaatactta actgaatcta
1081 tatgcaactt atctttcagt acattgcact ggaatttgcc atttgctagc acttgctgcc
1141 tatctgtagt gcttatggga ttcatgtcag aactaactac tacctgtatt ttgtaggttt
1201 aagagtgtaa attattggtc cccttcttgc attttctctc aatttattca gcatccagag
1261 tgctataaat tcacatcatc aattcatcat ctccaatata atgcagctgc aagtttcata
1321 catggatgtg gcttgtttcc gacatcgcag agacaaatac ccagtgttct agattccaga
1381 aatgttatca gtgacaatgt gtgttcaggc taggtgccaa aggaagtaca gataagctac
1441 agtacatcag gaatgagagg agtgcatcaa aatactgaag accatgatgg atatttcgaa
1501 attgcaaatg aggggtggcc ggtctgtaaa aacagttttc tcctaaaaga tcgacattgc
1561 tcaagcgacc ttaatctaga aaataatttc aaaggaaact aggaatcatg gcatggatca
1621 atgaggaggc actttctaag ccaagtgatc aagtcaaggt gcaaacttat cacgaaggtc
1681 tttcagaact cattcgaagt gtttttgcgg cctgcaatcc taatcggcca ataacacata
1741 cgccttctgg ccaaactcct ctacccttac tctcataaat aggagctaac attcatatga
1801 ggtcaatgta ccaaggaaag gttgataaca atcaaaatcg aaaggatgga gtaacgattg
1861 cgtgagtgct agtcctcaga attaattggc cagaccatca aacattgttc ctcattgatt
1921 ggtagtaatt aattgtctag acattgtgga atgatgggaa ggtatctagc tttttctcta
1981 tgc
//