LOCUS AK069848 1975 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023034N13, full insert sequence. ACCESSION AK069848 VERSION AK069848.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1975) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1975 /clone="J023034N13" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 174..1472 /db_xref="Osa1:LOC_Os01g60230" /note="(Rice Genome Annotation Project) auxin hydrogen symporter, putative, expressed" /note="mapping to R01-TIGRv4S1-001583F (Chr.1: short arm=35161424, long arm=35165968, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG91635.1" /translation="MMERSLMEALATAAQGGTVGTSVFDMLKYAVLPIAKVFTVCFMG FLMASKYVNILQPNGRKLLNGLVFSLLLPCLIFSQLGRAITIEKMLQWWYIPVNIVVG AVSGSLIGFVVASIIRPPYPYFKFTVIHIGIGNIGNIPLVLIAALCRDPTNPFGDSDK CNEDGNAYISFGQWVGAIIVYTYVFKMLAPPPGESFDSAEEDILPIKASGDNVVPEKG KYPTSTRTSTVPENEPLLSSEGDKNVSTSLGSKIMGIVRSMVKFLKDKQLLQPPIIAS VFAIAIGVVPVLKNFVLTDDAPLFFFTDSCLILGEAMIPCILLAVGGNLVDGPGEGSN RLGVRTTVAIIFARLILVPLAGVGIIVLVDKLGFIPKDDKMFKFVLLLQHSMPTSVLS GAVANLRGCGKESAAILFWVHIFAVFSMAGWIILYLSLLF" BASE COUNT 489 a 436 c 466 g 584 t ORIGIN 1 gatccgatag cttaatctcg agcgcttcga gttcgatctc tcgtgaaggg gacgacgagg 61 gcattgtctc cctcctcgcg cgcgcggagt cgccgccgcc gccgcctcgt cctcggccac 121 gcggaagtga agaagaagaa gaagaagtga actagtgaag cctggggcga gccatgatgg 181 agaggtcgct gatggaggcg ctggctacgg cggcgcaggg aggcaccgtg gggacgtcgg 241 ttttcgacat gctcaagtac gccgtgctgc ccattgccaa ggtgtttacc gtctgtttca 301 tggggttcct catggcctct aagtatgtca atatcctcca gccgaacggc cgcaagcttc 361 tcaatgggct tgtgttctcg cttctacttc cttgccttat attttcccaa ctgggtagag 421 caatcacaat cgaaaagatg ctgcaatggt ggtatattcc agtaaatatt gttgtaggtg 481 cagtgtcagg ctctttgatt ggctttgtgg tggcttctat catccgacca ccttatccat 541 acttcaagtt cactgtgatt cacattggaa tagggaatat tggaaatata cctctggttc 601 tcattgcagc attatgtcga gatcccacca atccttttgg tgactctgat aaatgtaatg 661 aagatgggaa tgcgtatatc tcatttggtc aatgggttgg tgcaattatt gtttacacat 721 atgtgttcaa gatgcttgct ccaccacctg gtgaatcctt tgatagcgct gaagaagata 781 ttcttccaat taaggcatct ggagataatg tggtgcctga aaaagggaaa tatccaacaa 841 gcactcgcac tagtactgta cctgaaaatg agcctttgtt atcttctgaa ggtgataaaa 901 atgtttctac ttctctagga tcgaagataa tgggcattgt tagaagcatg gttaagttcc 961 taaaagacaa gcagcttctt cagccaccaa ttattgcctc tgtttttgca attgccattg 1021 gtgttgttcc agtcttgaag aattttgtcc tcactgatga tgcacctctg ttcttcttca 1081 cagacagctg tctcattcta ggggaagcaa tgatcccttg cattttgctt gcagtggggg 1141 gcaatcttgt cgatggtcct ggtgaaggaa gtaacaggct tggtgtgcgg acaaccgttg 1201 ctattatttt tgcacggctc atcttggttc ctcttgctgg ggttggcatc attgtgttgg 1261 ttgataaact tggtttcatt cctaaagatg acaaaatgtt caagtttgtc ttgctactgc 1321 agcattctat gcccacatct gtgctgtcag gtgctgttgc aaacctgagg ggctgtggaa 1381 aagaatctgc tgctatcttg ttctgggtgc acatctttgc tgtgttctcc atggcaggat 1441 ggattatttt gtatttgagc ttactcttct aagtacgtca taccctgatg ctatactgca 1501 caggaacgtc cataagatca aaatatcacc agatatacca gaaaaagata gtaccatgac 1561 atgtacatta gccagtaaac catggcgaca gcctgaaggt acgagttgta tcagtattca 1621 gtatagatat ggttctcctg cccagtgccc aatcgcttaa gcgccactgc tatgttaatt 1681 ttgctaatcg ctcgctgcta caagcaactg agcaatgaga aaatgagggc atagcggtat 1741 tgccgatgcc cagatcatca ggtcctcatg acctttaggt cggtttccta tataagcctc 1801 tttcctttat taatgtagcc ccccccaccc cacaatgatc ttcattgaat gaactacaag 1861 ctccaaagtg aaaatattgg ttaaaaggca agcccaaacc gaaactttga ttataaaagg 1921 tggcccaaag catgaacttc ggttgaaact ttgattatat atcttgatta tatgg //