LOCUS AK069824 1507 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023026A06, full insert sequence. ACCESSION AK069824 VERSION AK069824.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1507) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1507 /clone="J023026A06" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1507 /db_xref="Osa1:LOC_Os05g01460" /db_xref="RAP-DB:Os05g0104900" /note="(RAP Annotation release2) Similar to Clone ZZD1296 mRNA sequence" /note="(Rice Genome Annotation Project) STIP1 homology and U box-containing protein 1, putative, expressed" /note="mapping to R05-TIGRv4S1-000020R (Chr.5: short arm=241785, long arm=244365, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 422 a 318 c 346 g 421 t ORIGIN 1 gtgtgttcaa accgaagcaa aacgggaagg aaaaccaacc aaatccaaga agctgcttct 61 atggcgacgg cggcggatgg cgtggcggta gcgaggcaag cggagctccg gcggatcgag 121 ggcaactcct gcttcaacaa ggcccgcctc ggcgccgcca tcgactgcta caccgaggct 181 atcgctcttt gccccgacgt cgccgtctac tggctcaacc ggggcctctg ccatttcaag 241 cgcaaggaat gggctaaggt cgaagaggat agcaggagag ctcttgccct tgatgacact 301 ctggtcaagg taacatcatc tcaatgtccc ttgttcatac ataaatcaag tgattgttac 361 aggtcttcaa ctttggtcca gggtcactat ttgctgggat gtgccatgct tgagaaggaa 421 caatgtgctc ttgctatcaa ggaattcaac aaggctttgg atcttcttaa gtcttcgaat 481 ttgggggaca aaatggcgga ggacatttgg caggttcttg cgaaggcaaa ataccaagat 541 tgggaaatac actccactaa gagagtttgg aagatgcaaa gtttaaagta tgttatgcat 601 gaaaaataat tgcaataata atgttccata attgtgttgc agattaactg tagtgtgaat 661 cttgggtatt ggtggccaat ttactcctat aacaacctgg acactccctt tattatctaa 721 aatttatgat gctttaaact ttctaacacc actgtgtcac atggacaatt agggaagcat 781 gtgaaaatgc tttgcaggag caccactttc ttagtggcac acttgtggga gatggctcaa 841 ccaatgagta tacagaccaa ctgaaattgt tatcagaagt cttcaccaaa gctacaatcg 901 acgatacacc aacagatgta atattattat ctatgttatc tcatgttcaa catctttgtg 961 ctagcatatt ttttttctct gtgatcttag gctgttgcta cctgaaaatc taggtgcctg 1021 actacctttg ctgccaaata acctttgaga tttttagaga tccagtgatc acacccagtg 1081 gtataacgta tgagaggtcc ataatccttg aacatctttg caaggtgggc aatttcgacc 1141 cggtgacacg agagcctctg aaagagcatc aattggttcc taacctggct ataaaggaag 1201 cagtccaagc ctacctcaag aatcacagtt gggcctacaa gttgaactga tgatgttgct 1261 ctgtagttgc ttagtgctaa caacaggtgt tgataaaatg ttgggttgtc aagggggaat 1321 tctttgcttt tctgatgtaa tgtataagca agttcattcg tgccctcatg gaattgattg 1381 attcttgggc aacttctgac gaaccttgga caattgtaca taaaacatca tagcagaacc 1441 ttggacggtt tcagacatac cgtgccaaaa tgacaattct cagtgacaaa ttattctttt 1501 gttcggt //