LOCUS AK069785 1705 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023031H02, full insert
sequence.
ACCESSION AK069785
VERSION AK069785.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1705)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1705
/clone="J023031H02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1705
/db_xref="Osa1:LOC_Os05g50600"
/db_xref="RAP-DB:Os05g0582800"
/note="(RAP Annotation release2) Peptidase S10, serine
carboxypeptidase family protein"
/note="(Rice Genome Annotation Project) serine
carboxypeptidase CPVL precursor, putative, expressed"
/note="mapping to R05-TIGRv4S1-001140F (Chr.5: short
arm=28920854, long arm=28922556, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 291 a 572 c 534 g 308 t
ORIGIN
1 gattttcaac gccacaaacc acagactgac aagctcatcc tgttcccatc tcaactgcgg
61 tcactcacca atggctccgc cgcttctcct cgtctcgctc ctgctcatcg gcttcgtcag
121 cgccagagcc atcacaccct cagctgaagc ggcggcggtg ttcccgaagg aagccctgcc
181 gaccaactcc ggctacctcc ccatcacgac aaccaacgcc tcgctcttct tcgcctacta
241 cgaggccacg cacccgctca cgccgccggc ctccacgccg ctcctcctct ggctccaggg
301 cggccccggc tgctccggcc tcgccggcaa tttcttcgag ctcggcccct acttcgtcaa
361 ccgcgacgcg ctctccctct cgcccaaccc cttctcgtgg aatcgccggt ttggtctcct
421 cttcatcgac aacccgctcg gcacgggctt cagcgccgcg ccgtcccccg ccgccatccc
481 caccaaccag tccgtcgtcg ccgcgcacct cttcgccgcg ctgcagtcgt tcttcgcgct
541 ccagccgggc tcccgctccc gccccttctt cctcaccggc gagagctacg ccggcaagta
601 tatcccggcg gctgggtcgt acatcctggc cgtgaacccc acgctgccga cgcggctgcg
661 ggttaacctc cacggcgtgg ccatcggcaa cgggctgacg caccccgtcg cgcaggtggc
721 gacgcacgcg gacaccgcct acttcatggg cctgatcaac gccaagcaga agcgggagct
781 ggaggcgctg caggcgaggg cggtggagct gacgaacgcg gcgaggtgga gcgaggcggc
841 cgacgcgagg gggctcgtgc tgtcgtggct ggagaacgcg acgggcctgg cgacgctgtt
901 cgacgcggcg aagaagagcc cctacgagac gggccccgtg gggaagttcg tgaaccgggc
961 ggaggtgaag acggcgctgg gcgcgcgcgg cgacgtggag tgggaggagt gcagcgacgc
1021 ggtgggcgcg gcgatgcacg gggacgtgat gaagagcgtg aagccggagg tggaggcgct
1081 gctgcgggga acgcgcgtgc tgctgtacca gggcatccgc gacctcaggg acggcgtggt
1141 atcgacggag gcgtggatgc gggagctgga gtgggacggc ctgcccgcct tcctcgacgc
1201 cgaccgcgcc gtgtggcgca tcggcgagga gctcgccggg tacgtgcagc gctccggccc
1261 gctctcccac gtcgtcgtct acggcgccgg gcacctcatg ccggcggaca acggccgcgc
1321 ggcgcaggag atgatcgagg attgggtgtt gcaggcgggg ctattcgggc gccacggcgg
1381 gatgaagcgc gcggcctgac tccgcactcc gggcgccggc ggaggccaac ctgtggcctc
1441 atctcttgcg gtgtcaaact ctaatctgat tttagaatcg agcagagtac atcgaggaat
1501 acaagcattt gagtctataa ttttttcttc tggtgtggtt gaattcatcg tgataaacta
1561 tcctgatttc attgggatta tctcctctag aaggcagctt attcaggttt gttttttgtt
1621 cagtccaaga tcagagggca ataccgaagg atcactttgt accaaactac caatgcagta
1681 tattcaataa caaggactta gaagc
//