LOCUS AK069768 2045 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023030K20, full insert
sequence.
ACCESSION AK069768
VERSION AK069768.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2045)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2045
/clone="J023030K20"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2045
/db_xref="Osa1:LOC_Os02g57260"
/db_xref="RAP-DB:Os02g0817700"
/note="(RAP Annotation release2) Similar to
3-ketoacyl-CoA thiolase (Fragment)"
/note="(Rice Genome Annotation Project) 3-ketoacyl-CoA
thiolase 2, peroxisomal precursor, putative, expressed"
/note="mapping to R02-TIGRv4S1-001588R (Chr.2: short
arm=35075008, long arm=35079328, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 545 a 453 c 538 g 509 t
ORIGIN
1 ttgaagtaat cggcgctttc gcgagagaga gcgatacgaa caagagaaaa tcttctccag
61 acaccgcggc gggcttcccc accccatcgg aaggaagaag acgaccagct cgcgcgctcg
121 gatctcagcc atggagaagg cgatcgatcg ccagcgcgtc ctcctcgccc acctcctccc
181 ctcctcctcc tccgaccaat cgctcctctc cgcgtcggcg tgcgccgccg gggacagcgc
241 cgcctaccag aggacttccg cctacgggga cgacgtcgtc gtcgtcgctg cctacaggac
301 acccatatgc aaggccaagc gaggaggttt caaggataca tacccagagg accttcttac
361 tgttgttcta aaggctgttc tggacaacac taagatcaac cctggtgaaa ttggtgacat
421 tgtagttggc acggtgctag gtccaggctc gcagcgtgca atcgagtgca gggctgcggc
481 tttctatgct ggagttcccg aaaacgttcc tgttagaact gtcaaccggc aatgttcctc
541 tggattacag gcagtggctg atgttgccgc ggccattaaa gctgggttct acgacatagg
601 gattggtgca ggcctggaat ccatgtcagt aaatgctatg ggttgggaag gacaagtaaa
661 ccctaaagta aatgaagtcc agaaagcaca ggattgtctt ttgcccatgg ggataacgtc
721 cgaaaatgtt gcgcaccgat atggtgtaac aagacaagag caggatcagg ctgctgctga
781 gtctcatagg agggctgctg cagccacagc tgctgggaaa ttcaaagatg agattgttcc
841 ggtgcctaca aagattgttg accccaagac tggagaggaa aagaaagttg tgatatcagt
901 tgatgatgga attaggccag ggaccacagc atctggattg gcaaagctta aaccagtttt
961 ccggaaggat ggtaccacaa ctgcaggcaa ctctagtcaa gtgagcgatg gtgctggagc
1021 tgttcttctc atgaggaggg acgtagcgat gaagaaggga cttcctattc ttggtgtttt
1081 caggagcttt gctgctgttg gagtagatcc tgctgttatg ggtgttggtc ctgcagtagc
1141 aataccagct gcagtgaagt ctgctggact ccagattgaa gacattgatc tgtttgaatt
1201 gaatgaggcc ttcgcttcgc agttcgtgta ttgctgcaac aagctgggac tggacaggtc
1261 aaaagtaaac gtgaatggag gcgcaatcgc cctaggacat cctcttggtg caacaggtgc
1321 ccggtgcgtc gcaactcttc tgaatgaaat gaagcgccgg ggcagggact gcagattcgg
1381 tgttgtcacc atgtgcattg gatctggcat gggggcagca gctgtttgag cggggtgact
1441 cggtcgacca attctcaaac gtgcgccacc attagcggca gttttctaag agaaatgcaa
1501 agcaaagcag tggtgcaaaa tcatcatggt ggtcagtcca atggagcata ctctggcagt
1561 aagatctata ccgaaaacta aatgcaggaa acacgtaatc ttctccggtg aaaggtgtaa
1621 cagtatattg aagatctttt catgtaacat tttgcactaa taataattta tgcgaataag
1681 gggcatgcat gctcaatgtt tgttttgtca agtgttccac acgaaacact gagaggagca
1741 cagtggttgc aaatgttgaa gggcctgata agggtaggcc tgatcatgga taatttggcc
1801 caaatcaaat ctggcctggc ctgatcgttg tccaaaatac ttagtactac tttctctgta
1861 aaaaaataat acagtataaa acaatttatt ttgcttgtta ggacaatgct ttaatcacca
1921 actgctttat taatatatta tatttatgtg acacagaagt ataattacag gaaagcattt
1981 gtgaatataa atctaatagc actcattact tttgaatgta aatctaatga cattaatttt
2041 gtctc
//