LOCUS AK069703 2733 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023027C22, full insert
sequence.
ACCESSION AK069703
VERSION AK069703.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2733)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2733
/clone="J023027C22"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2733
/db_xref="Osa1:LOC_Os03g62410"
/db_xref="RAP-DB:Os03g0840800"
/note="(RAP Annotation release2) Similar to Phospholipase
D"
/note="(Rice Genome Annotation Project) phospholipase D
gamma 3, putative, expressed"
/note="mapping to R03-TIGRv4S1-001723R (Chr.3: short
arm=35289128, long arm=35293832, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 626 a 808 c 764 g 535 t
ORIGIN
1 gacgtgcccc cgcccgcgcc gccatctctc tccttcctcc tgtattgtta cgcaagccat
61 ccgagccaag caggagaaga ggaagaggaa gaggaagagg aagagcatgc ccccctgcgc
121 ggcatgggga aaagctccgc cgacttgtcc gcctcctcgg agtcggccgt gctcctgcac
181 ggcgacctcg acatttggat aaccgaggcc aagtgcctcc ccaacatgga catcatgtcg
241 gagcggatgc gccgcttctt caccggctac ggcgcctgcg gctcctcgtg cggcggcacc
301 ggcgacaacg cgcgccgggc cggcggcggc gtcaggccca agaagatcat caccagcgac
361 ccctacgtct ccgtctgcct cgccggcgcc accgtcgcgc agacgcgggt catccccaac
421 tccgagaacc ccaggtggga ggagcgcttc cgcgtcgagg tcgcccacgc cgtctccagg
481 ctcgagttcc acgtcaagga caacgacgtc ttcggcgcgc agctcatcgg cgtcgcctcc
541 ctccccgtcg acaggatcct ctccggcgcc cccgccgagg gctggttccc catcgacggc
601 cactgcagca gcaaccccca tgcggccgcc gccggagctc cgcctctccg tccagtacag
661 gcccatcgac gacaaccccc tctacagggg cggcgccggc gccgtcccca acgcctactt
721 ccctctccgc cgaggtggcg gcgtcaccct ctaccaggac gcccacgtcg ccgacggcgg
781 cctcccggcc atccagatcg ccggcggaag ggcgtacgag cacggccgat gctgggagga
841 catctgccac tccatcgtgg aggcgcacca cctcgtgtac atggtcggat ggtccatcta
901 ccaccccgtc aagctcgtca gggagcccac ccgggcgctc cccggcgaga cgccatcgac
961 gctcggcgag cttctcaaga aaagggctcg cgagggcgtc cgcatcgtca tcttgctctg
1021 ggacgacaag acgtcgcatg acaagttcct tctcaaaacg gttgaatgca ggatggtgtc
1081 atgcatacac acgacgagga gaccaaaaag tttttcaggc attcaggtgt tcactgtgtg
1141 ctggttcctc gctatgccag cactaagctt agcattttca agcagcaggt agtgggaact
1201 ttatttacac atcatcagaa atgtgtgctt gttgatacac aagctactgg gaacaaccgc
1261 aaaatcactg ctttcattgg tggtctagac ttgtgcgacg gcagatacga tacacctgaa
1321 cataggcttt tcaaagatct tgataccgct ttcaacaagg acttccataa tcctacattt
1381 cctgttaatt catatggacc aagacagcca tggcatgatt tacactgcaa gattgagggc
1441 cctgctgcct ttgatatact gacaaacttt gaacagcggt ggagaaaagc aaccaaatgg
1501 aaggtcaatc ttaagaaagt tgcaagttgg catcatgaca cgctgataaa aataaaccgg
1561 atgtcctgga ttgttacccc agctgcagat gaggctaatg cacatgtttg tgaagaaaag
1621 gacccagaaa attggcatgt gcaggtgttc aggtcaattg attcaggttc tgtaaagggg
1681 ttcccaaaaa ttgttcagga ggcagagtct cagaatcttg tctgtgcaaa gaatctaaag
1741 atcgacaaaa gcatacacag tgcatatgtc agagcaatca ggtctgcgca gcacttcata
1801 tacattgaga accagtattt cattgggtca tcgttcttat ggtcctcaca taaaagcgca
1861 ggtgctgata acttaatacc tgtggagctg gccttgaaga ttgcaagcaa gatcaaggca
1921 aatgagcagt tcgcggtgta cattgtccta ccaatgtggc ctgaaggcat cccaaccgcg
1981 gcaccgatgc agcaaatcct cttttggcag agccaaacaa tgtctatgat gtacaagatc
2041 atagcggacg ctctgcagat gcagggattg gttgaagctc accctcaaga ttatctgaat
2101 ttctactgcc tcggcaagcg cgaggtcgcc gccggtgaca gcatgtccca gacgagctta
2161 tgcaatgaca actccactct gcgctcggca cagaagctcc ggagattcat gatctatgtg
2221 cactcgaaag ggatggtggt ggacgacgag tacgtcatca tcggatcggc caacatcaac
2281 cagaggtcca tggaaggctg cagggacacc gagatcgcca tgggcgccta ccagccacac
2341 tacaagtggt ctgctgatca cggccaaggc cctcctcgtg gacaggtgta cgggtacagg
2401 atgtcgctgt gggcggagca ccttggggcg gtggaggagt gcttcgggcg gccggagacg
2461 ggggagtgcg tgaggcgggt gagggagatg gcggaggaga actggagggc gtacgtgtcg
2521 ccggagatgg aggagacgaa ggggcacctg atgtgttacc cgttgaaggt ggacaaggac
2581 ggccgcgtcc gctctctccc cggccacgac tgcttccccg acgtcggcgg caaggtcctc
2641 ggcactcaaa cctcgctccc caatgccctc accacctagt acctgtacca tatcccgcgt
2701 gaatatgaat atgaatgaat gccactgttt tgt
//