LOCUS AK069645 2370 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023027O16, full insert sequence. ACCESSION AK069645 VERSION AK069645.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2370) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2370 /clone="J023027O16" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 69..2129 /db_xref="Osa1:LOC_Os04g57840" /db_xref="RAP-DB:Os04g0674600" /note="(RAP Annotation release2) Oligopeptide transporter OPT superfamily protein" /note="(Rice Genome Annotation Project) transposon protein, putative, unclassified, expressed" /note="mapping to R04-TIGRv4S1-001275R (Chr.4: short arm=34221268, long arm=34225012, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG91535.1" /translation="MARSGRERRDQEEEAAVVSVERVFEGRVVPGWKEQVTLRALAVS ALLGAMFSVIVMKLNLTTGIIPSLNVSAGLLGFFLLTSWTKLLDKAGVASVRPFTRQE NTVVQTCVVACSGIAFSGGFGSYIFAMSDRISDQSGEARDEHNIKNPSLGWMIGFLFI VSFLGLFSVVPLRKIMIIDYKLIYPSGTATAHLINSFHTPQGAKLAKMQVKMLGKFFV MSFSWGFFQWFYTGGDGCGFMSFPTLGLEAYRNKFFFDFSATYVGVGMICPYLVNISV LLGGVMSWGIMWPLIEHKKGDWYPADLKPSSLRGIVGYRVFISISLILGDGLYNFLKV MTRTTTALVMQVRAMMSEPTLPVSGGGGQTPEETFDDKRRTELFLKDQIPNWLALSAY VVIAVVSIATVPRIFHQLRWYHVAVSYVVAPVLAFCNAYGCGLTDWSLATTYGKLAIF TVGAWADASDGGIIAGLAACGVMIGIVSTASDLTQDFKTGYMTLASPRSMFVSQVIGT AMGCVIAPSVFWLFYKAFHDIGMPGSEYPSPNALVYRNMAILGVQGLGSLPKHCLDLC IGFFVAAIAVNLARDLAAPKVARFLPLPMAMAIPFYLGPYFGIDMCIGSLIRFVWDRL DGARAKAFAPPVASGLICGDGIWTLPQSVLALAGVKPPICMKFLSRTTNIKVDAFIAK LPSS" BASE COUNT 422 a 733 c 734 g 481 t ORIGIN 1 ggcctccaca cctcgcaacc gcgatcgatc gagagagaga gcgagagcga gagctcaatt 61 cgcgggccat ggcgaggagc gggagggagc gtagagatca ggaggaggag gcggcggtgg 121 tgtcggtgga gcgggtgttc gaggggaggg tggtgccggg gtggaaggag caggtgacgc 181 tgcgggcgct ggcggtgagc gcgctgctgg gcgccatgtt cagcgtgatc gtgatgaagc 241 tgaacctgac gacggggatc atcccctcgc tcaacgtctc cgcggggctc ctcggcttct 301 tcctcctcac gtcgtggacc aagctcctcg acaaggccgg cgtcgccagc gtccgcccct 361 tcacccgcca ggagaacacc gtcgtccaga cctgcgtcgt cgcctgctcc ggcatcgcct 421 tcagcggggg ttttggcagc tacatattcg cgatgagcga caggatcagc gaccagtcag 481 gcgaggccag ggacgagcac aacatcaaga accccagctt gggctggatg attggattcc 541 tcttcattgt cagcttcctg ggcctcttct cagttgtgcc actcaggaag ataatgatca 601 tcgattacaa gctcatatac ccgagtggca ctgcaaccgc acatctcatc aacagcttcc 661 acactcccca gggtgcaaag cttgccaaga tgcaggtcaa aatgctgggc aaattcttcg 721 tgatgagctt ctcctggggc ttcttccagt ggttctacac cggcggcgac ggttgcgggt 781 tcatgtcgtt cccgacgctg ggtctcgagg cctacagaaa caagttcttc ttcgatttct 841 ctgcgacgta cgtcggcgtc gggatgatct gcccttacct cgtcaacatc tccgtgctcc 901 tcggaggcgt catgtcgtgg ggaatcatgt ggcctctcat cgagcacaag aagggtgact 961 ggtatcctgc tgacctcaaa cccagcagcc tccgcggcat cgtcggctac cgggtgttca 1021 tctccatttc actcatcctc ggcgacgggc tgtacaactt tctgaaggtg atgacaagaa 1081 ccacaacggc gctggtgatg caggtgcgcg cgatgatgtc tgagccgacg ctgccggtct 1141 ccggcggcgg cgggcagacg ccggaggaga cgttcgacga caagcggcgg acggagctgt 1201 tcctcaagga ccagatcccg aactggctgg cgctgagcgc gtacgtggtg atcgcggtgg 1261 tgtcgatcgc gacggtgccc cgcatcttcc accagctgag gtggtaccac gtcgcggtgt 1321 cgtacgtggt ggcgccggtg ctggcgttct gcaacgcgta cgggtgcggg ctgacggact 1381 ggtcgctggc gacgacgtac ggcaagctgg ccatcttcac ggtgggggcg tgggcggacg 1441 cgtcggacgg cggcatcatc gcggggctgg cggcgtgcgg cgtgatgatc gggatcgtgt 1501 cgacggcgtc ggacctgacg caggacttca agaccgggta catgacgctg gcgtcgccgc 1561 ggtccatgtt cgtgagccag gtgatcggca ccgccatggg gtgcgtgatc gcgccgtcgg 1621 tgttctggct cttctacaag gcgttccacg acatcgggat gccggggtcg gagtacccgt 1681 cgccgaacgc gctggtgtac cggaacatgg ccatcctcgg ggtgcagggc ctcggctcgc 1741 tgcccaagca ctgcctcgac ctctgcatcg gcttcttcgt cgccgccatc gccgtcaacc 1801 tcgccaggga cctcgcggcg cccaaggtgg cgaggttcct cccgctgccg atggccatgg 1861 cgatcccctt ctacctcggc ccctacttcg gcatcgacat gtgcatcggc agcctcatcc 1921 gcttcgtctg ggaccgcctc gacggcgcca gggccaaggc gttcgctccc cccgtcgcgt 1981 cgggcctcat ctgcggcgac ggcatctgga cgctgccgca gtcggtgctc gccctcgccg 2041 gtgtcaagcc tcccatctgc atgaaattcc tctcccggac caccaacatc aaggtcgacg 2101 cgttcatcgc caagctcccc tcctcctagc taccatgcag ctgatcgacg agctagccat 2161 ctatctagct agctcatgac cactcactca accatgacaa cttcatatat agctagcagt 2221 agcacataca ttaatgtcgt agcctccttg tgtcttgctt ccttttagaa tcagatgcct 2281 ttgctagtag cccgcatgca tgcatgtgac acatataaat agctactagg aaccgagcag 2341 caatgcaagt actacattat ttggactgtc //