LOCUS       AK069645                2370 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J023027O16, full insert
            sequence.
ACCESSION   AK069645
VERSION     AK069645.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 2370)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..2370
                     /clone="J023027O16"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             69..2129
                     /db_xref="Osa1:LOC_Os04g57840"
                     /db_xref="RAP-DB:Os04g0674600"
                     /note="(RAP Annotation release2) Oligopeptide transporter
                     OPT superfamily protein"
                     /note="(Rice Genome Annotation Project) transposon
                     protein, putative, unclassified, expressed"
                     /note="mapping to R04-TIGRv4S1-001275R (Chr.4: short
                     arm=34221268, long arm=34225012, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG91535.1"
                     /translation="MARSGRERRDQEEEAAVVSVERVFEGRVVPGWKEQVTLRALAVS
                     ALLGAMFSVIVMKLNLTTGIIPSLNVSAGLLGFFLLTSWTKLLDKAGVASVRPFTRQE
                     NTVVQTCVVACSGIAFSGGFGSYIFAMSDRISDQSGEARDEHNIKNPSLGWMIGFLFI
                     VSFLGLFSVVPLRKIMIIDYKLIYPSGTATAHLINSFHTPQGAKLAKMQVKMLGKFFV
                     MSFSWGFFQWFYTGGDGCGFMSFPTLGLEAYRNKFFFDFSATYVGVGMICPYLVNISV
                     LLGGVMSWGIMWPLIEHKKGDWYPADLKPSSLRGIVGYRVFISISLILGDGLYNFLKV
                     MTRTTTALVMQVRAMMSEPTLPVSGGGGQTPEETFDDKRRTELFLKDQIPNWLALSAY
                     VVIAVVSIATVPRIFHQLRWYHVAVSYVVAPVLAFCNAYGCGLTDWSLATTYGKLAIF
                     TVGAWADASDGGIIAGLAACGVMIGIVSTASDLTQDFKTGYMTLASPRSMFVSQVIGT
                     AMGCVIAPSVFWLFYKAFHDIGMPGSEYPSPNALVYRNMAILGVQGLGSLPKHCLDLC
                     IGFFVAAIAVNLARDLAAPKVARFLPLPMAMAIPFYLGPYFGIDMCIGSLIRFVWDRL
                     DGARAKAFAPPVASGLICGDGIWTLPQSVLALAGVKPPICMKFLSRTTNIKVDAFIAK
                     LPSS"
BASE COUNT          422 a          733 c          734 g          481 t
ORIGIN      
        1 ggcctccaca cctcgcaacc gcgatcgatc gagagagaga gcgagagcga gagctcaatt
       61 cgcgggccat ggcgaggagc gggagggagc gtagagatca ggaggaggag gcggcggtgg
      121 tgtcggtgga gcgggtgttc gaggggaggg tggtgccggg gtggaaggag caggtgacgc
      181 tgcgggcgct ggcggtgagc gcgctgctgg gcgccatgtt cagcgtgatc gtgatgaagc
      241 tgaacctgac gacggggatc atcccctcgc tcaacgtctc cgcggggctc ctcggcttct
      301 tcctcctcac gtcgtggacc aagctcctcg acaaggccgg cgtcgccagc gtccgcccct
      361 tcacccgcca ggagaacacc gtcgtccaga cctgcgtcgt cgcctgctcc ggcatcgcct
      421 tcagcggggg ttttggcagc tacatattcg cgatgagcga caggatcagc gaccagtcag
      481 gcgaggccag ggacgagcac aacatcaaga accccagctt gggctggatg attggattcc
      541 tcttcattgt cagcttcctg ggcctcttct cagttgtgcc actcaggaag ataatgatca
      601 tcgattacaa gctcatatac ccgagtggca ctgcaaccgc acatctcatc aacagcttcc
      661 acactcccca gggtgcaaag cttgccaaga tgcaggtcaa aatgctgggc aaattcttcg
      721 tgatgagctt ctcctggggc ttcttccagt ggttctacac cggcggcgac ggttgcgggt
      781 tcatgtcgtt cccgacgctg ggtctcgagg cctacagaaa caagttcttc ttcgatttct
      841 ctgcgacgta cgtcggcgtc gggatgatct gcccttacct cgtcaacatc tccgtgctcc
      901 tcggaggcgt catgtcgtgg ggaatcatgt ggcctctcat cgagcacaag aagggtgact
      961 ggtatcctgc tgacctcaaa cccagcagcc tccgcggcat cgtcggctac cgggtgttca
     1021 tctccatttc actcatcctc ggcgacgggc tgtacaactt tctgaaggtg atgacaagaa
     1081 ccacaacggc gctggtgatg caggtgcgcg cgatgatgtc tgagccgacg ctgccggtct
     1141 ccggcggcgg cgggcagacg ccggaggaga cgttcgacga caagcggcgg acggagctgt
     1201 tcctcaagga ccagatcccg aactggctgg cgctgagcgc gtacgtggtg atcgcggtgg
     1261 tgtcgatcgc gacggtgccc cgcatcttcc accagctgag gtggtaccac gtcgcggtgt
     1321 cgtacgtggt ggcgccggtg ctggcgttct gcaacgcgta cgggtgcggg ctgacggact
     1381 ggtcgctggc gacgacgtac ggcaagctgg ccatcttcac ggtgggggcg tgggcggacg
     1441 cgtcggacgg cggcatcatc gcggggctgg cggcgtgcgg cgtgatgatc gggatcgtgt
     1501 cgacggcgtc ggacctgacg caggacttca agaccgggta catgacgctg gcgtcgccgc
     1561 ggtccatgtt cgtgagccag gtgatcggca ccgccatggg gtgcgtgatc gcgccgtcgg
     1621 tgttctggct cttctacaag gcgttccacg acatcgggat gccggggtcg gagtacccgt
     1681 cgccgaacgc gctggtgtac cggaacatgg ccatcctcgg ggtgcagggc ctcggctcgc
     1741 tgcccaagca ctgcctcgac ctctgcatcg gcttcttcgt cgccgccatc gccgtcaacc
     1801 tcgccaggga cctcgcggcg cccaaggtgg cgaggttcct cccgctgccg atggccatgg
     1861 cgatcccctt ctacctcggc ccctacttcg gcatcgacat gtgcatcggc agcctcatcc
     1921 gcttcgtctg ggaccgcctc gacggcgcca gggccaaggc gttcgctccc cccgtcgcgt
     1981 cgggcctcat ctgcggcgac ggcatctgga cgctgccgca gtcggtgctc gccctcgccg
     2041 gtgtcaagcc tcccatctgc atgaaattcc tctcccggac caccaacatc aaggtcgacg
     2101 cgttcatcgc caagctcccc tcctcctagc taccatgcag ctgatcgacg agctagccat
     2161 ctatctagct agctcatgac cactcactca accatgacaa cttcatatat agctagcagt
     2221 agcacataca ttaatgtcgt agcctccttg tgtcttgctt ccttttagaa tcagatgcct
     2281 ttgctagtag cccgcatgca tgcatgtgac acatataaat agctactagg aaccgagcag
     2341 caatgcaagt actacattat ttggactgtc
//