LOCUS AK069484 1946 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023019D12, full insert
sequence.
ACCESSION AK069484
VERSION AK069484.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1946)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1946
/clone="J023019D12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1946
/db_xref="Osa1:LOC_Os01g40050"
/db_xref="RAP-DB:Os01g0582400"
/note="(RAP Annotation release2) Similar to Multidomain
cyclophilin type peptidyl-prolyl cis-trans isomerase"
/note="(Rice Genome Annotation Project) peptidyl-prolyl
isomerase CWC27, putative, expressed"
/note="mapping to R01-TIGRv4S1-000910R (Chr.1: short
arm=22918280, long arm=22923012, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 570 a 416 c 513 g 447 t
ORIGIN
1 ggacgaccat acgaacccga gcacccgagc catcccgacc ggccggagag cgagccctag
61 ggcagagcgg cggaggcgga ggccggaggc gaacgggagg ccggcgagat gtcgtcggtg
121 tacgtgctgg agccgccgac gaagggcaag gtggtagtgc agacgacggc cggcccgctc
181 gacatcgagc tgtggccgaa ggaggccccc aaggcggtgc gcaacttcgt gcagctctgc
241 ctcgagggct actacgacgg cacgctcttc caccgcgtca tcaagtcctt cctcgtccag
301 ggcggcgacc ccaccggctc cggcaccggg ggtgagagca tatatggggc cccatttgca
361 gatgagttcc atacgcgctt gaggtttaac cacaggggtt tagtggcgtg tgccaatgcc
421 ggcacgcctc actcgaatgg gagtcaattc tttatcagcc ttgaccgttg tgattggctc
481 gataagaaga ataccatctt tgggaaggtc actggcgatt ctattttcaa ccttctagcc
541 ttggctgata tcgagactga taaggatgat cgacctgtgt atccgcagaa aattctttca
601 gttgaggtac tctggaaccc atttgatgat attgttccaa ggcaacttaa gaagactgag
661 cctactgcca agggtgatat cgaggggaaa tcaaagaaga aagccgttaa gcaacttaat
721 gtgctttcat ttggagatga agtagaagag gaggagaatg aggcagcatc ctctgtgaag
781 gacaaaataa aaagtattca cgatgtgttg gatgatcctc ggtttcttaa aggagaggca
841 ccggatgagc aactgaccaa ggagcaagag gacaaaaaaa aggagactgt tcaatctgtc
901 agggaggctt tagtatcaaa aaaatctgac ttcagagagc tagagcatga ttcagaaaca
961 gatgattatc ctgacgatga aaacgaggag gattttgata acagaatgcg ctctcaaatt
1021 ctaagaaaac gcagggagct tggggacatc cgctctagtg aaacctccaa aaaaaacaga
1081 taaagcacac cgtaaagaca aggagttacc agttcacagg agtgacgatg acaatgatga
1141 cgacaatgaa gaccaccagc taaccaagtc tagaaaattt tctatgaaga aaaaaggcat
1201 tggctcagaa gccagtgctg aaaggatgtc caaaggcgat gctaatttgc agctattgaa
1261 tccagctgag caagagaagc atttgcaaaa acagaaaagg cgccgtcttc aaggccgtga
1321 agatgagacg ttagcgaagc tacagaagtt caagggatcg tttctcagta agaaccctgc
1381 aactggtaac acagaaaaga agactgatga agaggattac acagggtggc acagcaaccg
1441 gctgactttt gaacctgatt cttctaagga tggaatgacg aggaaagatg atccagatga
1501 ctatgtagtg gttgatcctc tccttgagaa aggaaaacaa aaattcaaca agatgcaagc
1561 aaagcttaag cggagagaac gtgaatgggc aggcagatct ctgacctgac cgcataagct
1621 gcttgaggtg ctttactgtt tccttcataa gcggccttcc tgaatttttc agcttacatt
1681 aatttatcct ttttttgcct ctcagaggtg caccgtgcaa aagattacct catatcataa
1741 cagtgccact actgcagttt tgatggtgtt gtaactgtac actgcgtttc gctatgttgt
1801 ggttcatggt agagggacca cctgtagact agtgctttta acattaacat ttgtatcatt
1861 gtcaatcaaa ctgtaaataa caattgtttt aaacttagag gttcataatg cccttattaa
1921 gttgcagtgg tctttttttt tattgg
//