LOCUS AK069406 2097 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023014B04, full insert
sequence.
ACCESSION AK069406
VERSION AK069406.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2097)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2097
/clone="J023014B04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2097
/db_xref="Osa1:LOC_Os12g07190"
/db_xref="RAP-DB:Os12g0169400"
/note="(RAP Annotation release2) CBS domain containing
protein"
/note="(Rice Genome Annotation Project) CBS domain
containing protein, expressed"
/note="mapping to R12-TIGRv4S1-000194R (Chr.12: short
arm=3530393, long arm=3535425, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 539 a 507 c 544 g 507 t
ORIGIN
1 ggaagcgcaa aaaacccacg cgctgtcgca ggagaaacga agccgaagct cccatttcca
61 ttccacctgc tctcccaact ctccggccgc cgccgccgcc gccgccgccg ccgcgctaac
121 ctcctccccg cgacgagcgc caccatgagc acggcctcgg cgacggcgcc gccgagccgc
181 cggacgcgga gccgcccgcc gtcggcgtcc tcccgcaagt ccgacgaccc ctccgccgcc
241 gccgccaacg ggaacgggaa ggcctcctcc aagcccacct cccccggcca gctgaccggg
301 gagaggacgg tgaggaagct gaggctgtcc aaggcgctga cgataccgga ggggacgacg
361 gtgtcggagg cgtgcaggag gatggcggcg aggagggtcg acgccgtgct gctcaccgac
421 gcgcagggcc tcctctccgg catcgtcact gataaggatg tagctacaag ggtggttgct
481 gaggggctgc gggtggagca aaccatcatg tccaagatca tgacaaggaa ccccacatat
541 gccatgtctg atacgcttgc cattgagcat tgcagaagat ggttcaaggt aaatttagac
601 acctcccagt tgtggaaaat ggtgaggtta ttgctatgct ggacattgct aaatgccttt
661 acgatgcaat atcaagactg gaaaaggcag cagaacaagg gagtgcaata gcagctgctg
721 tagaaggggt agagcgtcaa ttaggaggca acttttcagc tccttatgct ttcatagaaa
781 ctctaagaga gaggatgttc aaaccttctt tgtcaaccat tgtcacggag ggcacaaagg
841 tagcaattgt ttctccttca gacccagtgt atgtagcaac acagaaaatg cgtgaatttc
901 gagttaattc ggtggttgtt gctacaggaa acacactaca ggggatcttc acctcaaagg
961 atttgcttat gcgtgttgtt gcacagaatc tttctcctga attgacccta gtagaaaagg
1021 tgatgactgt aaacccagat tttgctacat tagacacgac aattcttgat gctctacata
1081 taatgcatga tggaaagttc ttgcatattc ctgttcttga tcgagaagga caaattgctg
1141 cttgcttgga tgtcctgcaa cttacccacg cagccattca attggttgaa ggaggaaatg
1201 acactgtaaa tgatgtggca aatacagtaa tgcagaggtt ttgggattct actcttgctt
1261 tggagtctcc tgatgaggaa tgcgatagcc gtagtgaagt atcattgctc ttggcatcag
1321 aaactggaga tggaaagagt agcatttacc cccctgttat tggaaattcg tttgccttta
1381 agcttcaaga ccaaaaggga cgcgtgcata gattcacttg tggctcagag agcttgaacg
1441 agctagcgtc ttctataaaa caaagattaa gtattactga cgaagagggc ataatgcaac
1501 tcctgtacga agacgatgaa ggtgaccggg tgctactgac aactgatgcc gatcttgctg
1561 gtgccgtgct ccatgccaaa tcgtccggtt tgaaggttct gaagttgcat atcgacctgt
1621 ctgaatccag cacagaggtg acaaagccat cacagcagct ggcagctgca cgcaggagtc
1681 ggttgtcgcc tgttcgtgtt gggctgatgg ctggtgtggt cgctctcagc ggtgcagcag
1741 tgatggttta cctgaaacga gctaaagtgt gatttcccca tgaattactg gtaatttttt
1801 caaacctgta tttttttcca gttcctggag ctaattatgc atcatgccaa agaaatgaca
1861 cattggagag caaccaaagt tgcatcagat gcactgaaac tctctgacgc cgggctgaag
1921 aatctgccta tgttggtttt tgtttcctca atttgcacgc atatcagcaa atttcactag
1981 tactgtgaaa tgtataaaca ttaggatgtt cctagttcat atttatgtac ttgtttacag
2041 ataaacagat atgtaaactc attttgaagg acagaagtaa atagatcctt ctctcct
//