LOCUS AK069330 1868 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023014M06, full insert
sequence.
ACCESSION AK069330
VERSION AK069330.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1868)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1868
/clone="J023014M06"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 374..1513
/db_xref="Osa1:LOC_Os11g10480"
/db_xref="RAP-DB:Os11g0210300"
/note="(RAP Annotation release2) Alcohol dehydrogenase 1"
/note="(Rice Genome Annotation Project) alcohol
dehydrogenase 1, putative, expressed"
/note="mapping to R11-TIGRv4S1-000268R (Chr.11: short
arm=5708138, long arm=5711756, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG91383.1"
/translation="MATAGKVIKCKAAVAWEAAKPLVIEEVEVAPPQAMEVRVKILFT
SLCHTDVYFWEAKGQTPVFPRIFGHEAGGIVESVGEGVTDLAPGDHVLPVFTGECKEC
AHCKSAESNMCDLLRINTDRGVMIGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCV
AKINPAAPLDKVCVLSCGISTGLGATINVAKPPKGSTVAIFGLGAVGLAAAEGARIAG
ASRIIGIDLNANRFEEARKFGCTEFVNPKDHDKPVQQVLAEMTNGGVDRSVECTGNIN
AMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNERTLKGTFFGNYKPRTDLPNV
VELYMKKELEVEKFITHSVPFSEINTAFDLMHKGEGIRCIIRMEN"
BASE COUNT 419 a 420 c 549 g 480 t
ORIGIN
1 ggccggccgt cgcgcatccg acggccactc accatcggcg tcgggggagg cgaaaacagc
61 ggctgcaatt ccgcttccag gtggaggggg aggaggcccg gtttgtgtgc cacgccgccc
121 cactccgtcc gtggtttgct acccaagaag acaagaagaa ggaagtggcg aaacctcacc
181 ctccatcctc catcctctcc tttcttcctt cgaggaggag gagctatata tagacgggga
241 tggttcatct agcctcctca ccagttttga tttgatctgt gtgatttgag tgagtgagtg
301 agattctttg gaggagggat tttggtttgg tttggtttgg tggtttgtgc gggattttgt
361 ggggaggaga gtaatggcga ccgcagggaa ggtgatcaag tgcaaagcgg cggtggcatg
421 ggaggccgcg aagccgctgg tgatcgagga ggtggaggtg gcgccgccgc aggccatgga
481 ggtgcgcgtc aagatcctct tcacctcgct ctgccacacc gacgtctact tctgggaggc
541 caagggacag actccagtgt tccctcggat cttcggccat gaagctggag gtattgtgga
601 gagtgttgga gagggtgtga ctgatcttgc ccctggtgac catgttctcc ctgtgttcac
661 tggggagtgc aaggagtgtg cccactgcaa gtcagcagag agcaacatgt gtgatctgct
721 caggatcaac actgacaggg gtgtgatgat tggtgatggc aaatcacgct tttccatcaa
781 cgggaagccc atttaccatt tcgtcgggac ttcgaccttc agcgagtaca ctgtcatgca
841 tgttggttgc gttgcgaaga tcaacccggc agctccactt gataaagttt gcgttcttag
901 ctgtggtatt tctactggtc ttggtgctac aatcaatgtg gcaaagccac caaagggttc
961 gacggtggcg atatttggtc taggagctgt aggccttgct gccgcagaag gtgcaaggat
1021 tgcaggagcg tcaaggatca ttggcattga cctgaacgcc aacagatttg aagaagctag
1081 gaaatttggt tgcactgaat ttgtgaaccc aaaggaccat gacaagccag ttcagcaggt
1141 acttgctgag atgaccaatg gcggagttga ccgcagcgtt gaatgcactg gcaacatcaa
1201 cgccatgatc caagcatttg aatgtgttca tgatggctgg ggtgttgctg ttttggtcgg
1261 cgtgccacac aaggacgccg agttcaagac ccacccgatg aacttcctga acgagaggac
1321 tctcaaggga accttcttcg gcaactacaa gccacgcacc gatctgccca acgtcgtcga
1381 gctctacatg aagaaggagc tggaggtgga gaagttcatc acacacagcg tgccgttctc
1441 ggagatcaac acggcgttcg acctgatgca caagggcgag ggcatccgct gcatcatccg
1501 catggagaac tgaggttttt caggggatta tggtgttggg taataagatt gggcagcttg
1561 agcagcctgc cttgggtgaa tgatgatata cggttcttct gtgtatcctg ggcaaatttc
1621 tggctttgtc aatcagtaat agtacggtat gaattccagt gtctgtagct gcaaagagtt
1681 tgttaagaat cagtgatctt ttggcgtaat attatcatat atttatacga gtttcagttc
1741 gtcaccctct tcacttttca gaactttttt aagtcttatg acttcagagc caccaaacgt
1801 gctgtttttg aattccatgg tggcttgaat ttggtacatg ttcatgtaaa tgtgggatat
1861 ttgtcatc
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