LOCUS AK069243 2696 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023010P21, full insert
sequence.
ACCESSION AK069243
VERSION AK069243.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2696)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2696
/clone="J023010P21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 1955..2305
/db_xref="Osa1:LOC_Os03g16130"
/note="(Rice Genome Annotation Project) ATP binding
protein, putative, expressed"
/note="mapping to R03-TIGRv4S1-000523R (Chr.3: short
arm=8875238, long arm=8881032, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG91335.1"
/translation="MEIESQFLVQMEYAEELANTIGQTVDATEMPDAIEIIFQTALNL
GRHGGVDEMMGKSASAMVLYSKAVSMLRFLLTEAPSLALNPALSLTRDDRRRLRTYIE
AVNARLVPLQYQRH"
BASE COUNT 683 a 633 c 683 g 697 t
ORIGIN
1 ggcgagtaga gacctggccc tcctcccctt ttctctctct gttccgcgcg gcgagataat
61 tcggttgctt ctccccgcgg ccgcggcggc atctctcccg gcggcggcgg agctcacgtc
121 cttcgcggcg aactgcgctc caggcagcgg gaccagaggg gatgggggac cgcgccgcgg
181 ggagcggcgg cgggggaggg ggaggaagcg gcgtgcggag ggtaggggac tacgtgctgg
241 tgcggcagat cgggtcgggg gcgtacgcgc gggtctggct cgggaagcac cgcacgcggg
301 cacggaggtg gccttgaagg agatcgccgt ggagcggctt agcagcaagc tccgcgagag
361 cctcctctcc gaggtcgaca tcctccggcg catccgtcat cccaacgtca tcgccctcca
421 cgagtccatc agggatggtg ggaaaatata tcttgtatta gagtactgtc gaggtggtga
481 cttacactca taccttcagc agcataaaag ggtttctgaa acagttgcta agcatttcat
541 ccagcagcta gcatctggtc tgcagatgct gcgtgaaaac aacgtggttc atcgagatct
601 aaaaccacag aacattcttc tagttgcaaa taatgaaaat tccctcttga agattgcgga
661 ctttggattt gcaaagtttt tagaaccttc ttctctggct gaaacacttt gcggttcacc
721 gctttacatg gctccagaag tcatgcaagc tcagaagtat gatgcaaagg cagatttgtg
781 gagtgttggt ataattctat atcaacttgt taccggatct cctcctttta ccggggatag
841 tcaaatccag ttgctgagaa atatactcaa tacacgagaa atacgatttc catctgattg
901 cgacttgagc catggctgca ttgacttatg cagaaagtta ctgcgaatca attcagtgga
961 acgccttacc gttgaagagt ttgtgaacca tccatttctc gctgaacatg ctttggagag
1021 aaccttgagc cggacaccat cggacataag agatggcttt ccattcatta atagcagtcc
1081 tacgagacct tcaagccaaa gttctcagga agattgtatg ccttttcctt tggatgatga
1141 gtcaactgga caggatgaag gtcctgtttc tgatagtaag agtgcaataa aatcctatgg
1201 gtttgccacg agtaaaaggc ttgataaaac ttcaggtcag agtccaacga gacattcaag
1261 tctggtctct aaatatatta ggggaaataa ttacgcatct agtagtcaac gcctggacca
1321 tcctaggaga atcaaggaaa acaagggtga tgaagggcac aaccctaaag gtggttatcc
1381 agaagattcc cctatcattg attcattaga gtttgtagat caggaatatg tctttgtgca
1441 cccagaggga tcctcctctt cgatgaatga ctcccgacag cgcaccatgc catcaaaact
1501 tgacagttct tctctttcac caccgaagtt attaactgct gtgagtgcac caaggccaat
1561 acatggcatg gcaattaaca gacagcaatc tggtggaact ggtagcttgg acagtcactg
1621 ctctccagta tctggtactt cacaaggatc tgcagatctc aacgatgcta tggatcaacc
1681 accatctgat tgtctgacca gggttagatt attggagcag tatgcgtcta ccatagcaga
1741 attggtgaaa gaaaagatta aagatgccaa gcacttagag ggattctcga ttcagctagt
1801 tgttcttgca acctggaagc aagcaattta catctgcact tcttatgcat cttctgccac
1861 aagagagaat ccttcccatg atgtcaccgc gaagggtttt ggctcaaatg ctccccattt
1921 gcttgcaaac tctcaactgt tatatgatac atgcatggag atagagagtc agtttttggt
1981 tcaaatggaa tatgctgaag aacttgccaa cactatagga cagacagttg atgctacaga
2041 aatgccagat gcgatagaaa tcatatttca gaccgcgctt aacctgggaa gacatggtgg
2101 tgttgatgag atgatgggga aatcagcatc tgccatggtg ctgtactcga aggcagtatc
2161 catgctgcgc tttctcctga ctgaggcacc gtcactcgcc ctgaaccccg ctctgtccct
2221 aacaagagat gatcgacgcc gcctgcgcac atacattgaa gccgttaacg ctaggctcgt
2281 cccgttgcaa taccagcggc actgaccgct cacctgtaca atattctttc atcctgtaca
2341 tatattcgtt ggcccaaacg agggcgtgta agatatgtca tgtctgagaa cgtgctccga
2401 ttagggagaa gtagcgaaaa atccagtgta acttgcccaa actgcctact gtaacgtgag
2461 ctcggtgtgc ttgcatggta cgcctgatta tcaggcagct caggttggca gctggaggcc
2521 cgaccatggt cgtttgtgga catgtaaagc agactgctac ctcgatggtt tgttcattaa
2581 aatttgggct tttacactgc atatgttgtc caagtcatcg ttgattttga gttgtgctgt
2641 ctaacttgtc caagtcctgt taattatgaa ttgaatttgt gtgtgtgttt tttctc
//