LOCUS AK069237 1800 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023010B07, full insert
sequence.
ACCESSION AK069237
VERSION AK069237.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1800)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1800
/clone="J023010B07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 95..1435
/db_xref="Osa1:LOC_Os06g46000"
/note="(Rice Genome Annotation Project) tubulin beta-3
chain, putative, expressed"
/note="mapping to R06-TIGRv4S1-001048R (Chr.6: short
arm=27876528, long arm=27879126, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG91329.1"
/translation="MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL
ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWA
KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP
DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLA
TPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR
GSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQ
NKNSSYFVEWIPNNVKSSVCDIPPIGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRK
AFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAEEEDYEEEEEDEEVAA"
BASE COUNT 388 a 527 c 469 g 416 t
ORIGIN
1 gccccctctc cgccatctcc aacgccgcct cctcctcctc ctcctcaacc ccacccacct
61 cgccgccgcc gccgtcgccg ccgccgccgc cgccatgagg gagatcctgc acatccaggg
121 gggccaatgc gggaaccaga tcggggccaa gttctgggag gtgatctgcg acgagcacgg
181 gatcgaccac accggcaagt actccggcga ctccgacctc cagctcgagc ggatcaacgt
241 ctactacaac gaggccagcg gcggccgcta cgtgccccgc gccgtgctca tggacctcga
301 gcccggcacc atggactccg tccgctccgg cccctatggc cagatcttcc gccccgacaa
361 cttcgtcttc ggccagtccg gcgccggcaa caactgggcc aagggccact acaccgaggg
421 cgccgagctc atcgactccg tcctcgacgt cgtccgcaag gaggccgaga actgcgactg
481 cctccaaggg ttccaggttt gccactcgct gggaggagga actggctccg ggatgggaac
541 cctgctcatc tccaagatca gggaggagta ccctgaccgg atgatgctca cgttctcggt
601 cttcccatcg cccaaggtgt ccgacactgt cgtcgagccc tacaatgcta ccctctctgt
661 gcaccagctt gttgagaatg cggatgagtg catggttctt gacaatgagg ctctctacga
721 catctgcttc cgcacgctca agctcgcgac acctactttc ggtgatctca accatcttat
781 ctctgcaaca atgagtggtg ttacctgctg cctccgcttc cctggccagt tgaactctga
841 cctccggaag cttgctgtca acctgatccc tttcccgcgg ctccacttct tcatggttgg
901 attcgctcct ctgacttcca ggggatccca gcagtaccgt gccctcactg taccagagct
961 gacccagcag atgtgggatg caaagaacat gatgtgtgct gctgaccccc gccatgggcg
1021 ctacctcaca gcctcagcca tgttccgcgg aaagatgagc accaaggaag ttgatgagca
1081 gatgctgaat gtccagaaca agaactcgtc atactttgtg gagtggatcc ctaacaatgt
1141 caagtcgagt gtgtgtgaca ttccacccat tggcctgaag atggcatcca cattcatcgg
1201 caactcgacc tcaatccagg agatgttccg ccgtgtcagt gagcagttca ccgccatgtt
1261 caggaggaag gctttcttgc actggtacac tggtgaggga atggacgaga tggagttcac
1321 cgaggctgag agcaacatga acgacctggt agctgaatac cagcagtacc aggatgccac
1381 cgctgaggaa gaggactatg aggaggaaga ggaggacgag gaggttgctg cctaagccac
1441 ctctctgcat gtttgagcta tatagatatc ccttgtgaca tttgctacta ctagttacca
1501 tcgttgattg ggggtgcttg ttagatgcta ggttaatgtt attatttcca aatactatgt
1561 tgccttgtcg gactattttt atctgggtta atggtatgtt caacattatt gtcttgaggt
1621 ggattaactg ttggaagtat gtagcaaagc ttgaggtgga atgcatatga aactgaactt
1681 tagctttgca gggcttattg gaccacctct gcgtgtttga actaaaatgc cacctccgac
1741 gacgccctgg gttatcaact tgattataaa ataaatattt tagaaaatgt ttttttttgg
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