LOCUS AK069211 1388 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023011I02, full insert
sequence.
ACCESSION AK069211
VERSION AK069211.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1388)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1388
/clone="J023011I02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 174..1157
/db_xref="Osa1:LOC_Os08g19610"
/db_xref="RAP-DB:Os08g0292600"
/note="(RAP Annotation release2) Peptidyl-prolyl
cis-trans isomerase, cyclophilin type domain containing
protein"
/note="(Rice Genome Annotation Project) peptidyl-prolyl
cis-trans isomerase, cyclophilin-type family protein,
expressed"
/note="mapping to R08-TIGRv4S1-000413F (Chr.8: short
arm=11721971, long arm=11726764, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG91317.1"
/translation="MVLPSSNTRATSSMAYPVSLSSLHHHPNNHHAFFLPSKTNHDNT
HKPIESSRISRRSLIFLPVLPSLLYASSSPALDDANIPSTSAIDTTITDRIFMDFSVC
PSYFRSDRTLGAELATCPDSEPLGRVIFGLYGRLLPLTTANFKAACTSAAYRGTLVHK
LLQGQFFVAGRQGPRRDRGEVQPPTGLVRNAETIDPKAFELKHARPGTLSLCLGQNDD
DDDIKLNPNYHNVEFLVTTGPGPCPELDGQNIVFGTVLEGMNVITSIATIPTYKPAER
IRFFNDFAQLIGDERAQTARALWDRPLKTVYISDCGELKVTKPSLSPPSLP"
BASE COUNT 339 a 377 c 286 g 386 t
ORIGIN
1 ggttctcctc cgctccttgc gccgccgcca agacgagcgg agggccgggc ggcgatctcc
61 atctggcaag cagagcagcg gaggggagga ggggatcctg ggaaggatat tagtgatttt
121 ctactgctgt ttcgtcagaa ggacaagaac tgaagaattc agttagcaac agtatggtgt
181 tgccttcatc aaataccagg gccacttctt ccatggctta ccctgtttcc ctgagcagcc
241 tccaccacca ccccaacaac caccatgctt tttttcttcc ctcgaaaaca aaccatgata
301 atactcataa acctattgaa tcctctagaa tttctagacg gtctctcatc ttcctccctg
361 tcctcccttc tcttctatac gcttcatcat cccctgcctt agatgacgca aacattccat
421 ccacctctgc cattgatacc accatcacag atcggatctt catggacttc agtgtctgcc
481 ctagctactt tcgctctgac cgcactttag gagctgagct tgctacatgt cctgattctg
541 aacctcttgg tcgtgtaatt tttggtttgt atggtcgact cctccccctc actactgcca
601 acttcaaagc tgcttgcact tctgctgcat accggggaac acttgtccac aagctccttc
661 agggccagtt cttcgttgct ggccgccaag gtcctcggcg tgacaggggc gaggtccaac
721 ctcccaccgg acttgtgagg aatgctgaga ctattgaccc taaagcattt gaactaaagc
781 atgcaaggcc tggcaccctc tcattgtgcc ttggacagaa cgatgacgat gatgacatca
841 agctcaatcc taattatcac aatgttgaat tcttggttac cactggacca gggccctgcc
901 cagagcttga tggacagaac attgtctttg gaactgtatt ggaaggaatg aatgttataa
961 ccagcattgc aactattcct acctataaac cagctgaaag gatccgcttc ttcaatgatt
1021 ttgcccagtt gattggtgat gaaagagctc aaactgctcg agcgttgtgg gatcgcccgc
1081 taaaaactgt ttatatcagt gattgcggag agctaaaagt gaccaaacca tcactttccc
1141 ctccaagtct gccataaaaa accacagagg caattttgtg tacctacact tattcttctc
1201 cctccaatgt caactgtata tatgccatct agtattaact gacatctgct gtgtttctgg
1261 cccaaaatgt gtacgacggg tctctgattc atcgaagtaa atatattaca gtgctgtgca
1321 aaattcttga cctgtcagct ttcatcttgg ataaccgttg agactatgat gctaatgatt
1381 agcttctc
//