LOCUS AK069080 2101 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023004I08, full insert
sequence.
ACCESSION AK069080
VERSION AK069080.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2101)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2101
/clone="J023004I08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2101
/db_xref="Osa1:LOC_Os09g08072"
/db_xref="RAP-DB:Os09g0255000"
/note="(RAP Annotation release2) Similar to Cell wall
invertase (EC 3.2.1.26)"
/note="(Rice Genome Annotation Project)
beta-fructofuranosidase, insoluble isoenzyme 7 precursor,
putative, expressed"
/note="mapping to R09-TIGRv4S1-000094F (Chr.9: short
arm=4164396, long arm=4169918, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 392 a 654 c 681 g 374 t
ORIGIN
1 gtcagactca tgactcaggg caccaaccaa acaggcgttt tcttcagagt ttcagagcag
61 aagcagagac accaacaaga aggcgatcag ctcgttcttc ttctccctct cctccagcgg
121 cggccatggc gagattaggc cttgccgtct gcgccgcctc cttccacctc ttccttcttc
181 ttgcgtcgac ctcctcgctc cggcgagctc ccacggaggc ggacacggcc aaccatgcca
241 gaagaactgc ctatcacttc cagcctgcaa agaactggca gaatgatccg aatgggccta
301 tgtaccataa cggtatgtac catttgttct accagtacaa cccgcatagc gcgctctggg
361 acatcggcaa cctctcctgg ggccactccg tctccggcga cctcctcaac tgggccgctc
421 tcgacaccgc gctcgacccc acctcgcctt tcgacgccaa tggctgctgg tcgggctccg
481 ccaccatcct ccccggcgcc ctcccggcca tcctctacac cggcatcgac gccagcaagg
541 agcaggtcca gaacgtcgcc ttcgccaaga acccctccga tccgctcctc cgcgagtggg
601 agaagcccgc gtacaatccg gtcatcgcgc tcccggccga tgtccccggc gacaagttcc
661 gtgacccctc gacggcatgg ctcggccgtg acggcctgtg gcgggtcgcc gtctccgccg
721 aggtggacgg cgtcgcgtcc acgctcgtct acaggagcaa ggacttcgtc cggtgggagc
781 ggaacgccgc gccgctgcac gcgtcgcgcg ccgcgggcat ggtggagtgc ccggacctgt
841 tccccgtagc ggagcgcggc gaggatggcc tcgacacgtc ggcgaacggc gccggcggcg
901 tgcgccacgt cctgaagctg agcgtgatgg acacgctcca ggactactac atggtcggca
961 cgtacgacga cgcggcagac gccttctcgc cggcggagcc tgagcgcggc gacgactgcc
1021 ggagctggcg gcggctggac tacgggcacg tgtacgcgtc caagtcgttc ttcgacgtgc
1081 gcaagaaccg gcgcgttctg tgggcgtggg cgaacgagtc cgacagccag gccgacgacg
1141 tcgcccgcgg ctggtccggc gtgcagacat tcccgaggaa aatgtggcta gccaaggacg
1201 gcaagcagct gctgcagtgg ccgatcgagg agatcaagac gctgaggagg aagcgcgccg
1261 gtctctggca aggcaccagg ctaggcgccg gcgcggtgca ggagatcgtc ggcgtggcga
1321 gctcgcaggc ggacgtggag gtggtgttca agattccgag cctggaggag gccgagaggg
1381 tggacgaccc caaccggctg ctggatcccc agaagctgtg cggtgagaag ggcgccgccg
1441 tgcggggcgg cgtcggcccg ttcgggctcc tcgtaatggc ctccggcgac ctgcacgagc
1501 acaccgccgt cttcttcagg gtgttcaggc accatgacaa gtacaagctt cttatgtgca
1561 ccgacttgac aaagtcgtcg acaagagcag gggtgtacaa gccggcttac ggcggattcg
1621 tggacatgga catcgacgat cacaaaacca tatcgctgag aacgttgatt gaccattcgg
1681 tggtggagag cttcggcggc ggcgggcggg cgtgcatcac ggcgcgggtt tacccggagc
1741 acgtggcgac gagcagcagc catttgtacg tgttcaacaa cgggagcgac gccgttaagg
1801 tggccaagct ggaggcgtgg gacctggcga cggcgaccgt caacgttgtt gttggagacc
1861 accacggcct tgttgcgccg gcgttggagt tggagccgac acgcacgacg cagtgatctg
1921 aggcctgaag cggctggccg gcactggcac agttggttcg atagtttgat ggcatcgtgc
1981 agccgattgg ttgtgtggtg atttgttcga ttgttgtgaa cagggtgtat gatctgtgac
2041 agaaagaaga gcacaaaaga aatcattcga tagtatacgt cacgtgcttt atatgttttg
2101 c
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