LOCUS AK069075 1789 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023007K10, full insert
sequence.
ACCESSION AK069075
VERSION AK069075.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1789)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1789
/clone="J023007K10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 49..1443
/db_xref="Osa1:LOC_Os03g18810"
/db_xref="RAP-DB:Os03g0299900"
/note="(RAP Annotation release2) Similar to Plastid
aminotransferase (Fragment)"
/note="(Rice Genome Annotation Project) transaminase/
transferase, transferring nitrogenous groups, putative,
expressed"
/note="mapping to R03-TIGRv4S1-000667F (Chr.3: short
arm=10521910, long arm=10525292, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG91242.1"
/translation="MAASPAAGAAAATVSSFVSPSSFSSVKASKPDRLRPARRAAAVN
VRCVSSPPATETSFKTKVPRNANMAKLQAGYLFPEIARRRAAHLLKFPDAKIISLGIG
DTTEPIPDVITNAMAKRAHALSTVDGYSGYGAEQGEKKLRAAIAATYYADLGIEETDI
FVSDGAKCDISRLQVLFGSNVKIAVQDPSYPAYVDSSVIMGQTGLYQEDVQKYGNIEY
MKCSPENGFFPDLSSVPRTDIIFFCSPNNPTGAAASRDQLTKLVKFAKDNGSIIVYDS
AYAMYISDDSPKSIFEIPGAKEVAIETASFSKYAGFTGVRLGWTVVPKELLFSDGHPV
AKDFNRIVCTCFNGASNISQAGGLGCLSPEGLKAMSDVVGFYKENTKIIVDTFTSLGF
NVYGAKNAPYVWVHFPGRNSWDVFAEILEKAHVVTTPGSGFGPGGEGFVRVSAFGHRE
NIIEAARRLKQLYK"
BASE COUNT 444 a 421 c 419 g 505 t
ORIGIN
1 gaatccgacc cgcgccgccg ccacctcttc ctccgctgcc caagagcgat ggccgcctcc
61 cccgccgccg gggccgcggc cgccaccgtc tcgtcgttcg tctcgccgtc gtccttctcc
121 tccgtcaagg catcgaagcc cgaccgcctc cgtccggcga ggagggcggc ggccgtcaac
181 gtccgatgcg tcagcagccc tccggccacc gaaacttctt tcaagacgaa agtaccacga
241 aatgccaata tggccaagct gcaagctggc tatctgtttc ctgagattgc caggagaagg
301 gcagctcacc tgctgaagtt tcctgatgcg aagattataa gccttgggat cggtgacact
361 acagagccca ttccagacgt cataactaat gccatggcaa agagagcaca tgctttatcc
421 acagttgatg gttatagtgg ttatggagct gaacagggtg aaaagaaact aagggcagct
481 attgctgcaa cctactatgc ggatcttggt attgaagaaa cagatatatt cgtctctgat
541 ggtgcaaaat gtgacatttc tcgtctgcag gtcctttttg gatctaatgt gaagattgca
601 gttcaagatc catcatatcc tgcctatgtt gattcaagtg ttatcatggg gcaaactggt
661 ttatatcagg aggatgttca gaagtatgga aatattgagt acatgaaatg cagtcctgaa
721 aatgggtttt tccctgatct gtcaagtgtt ccacgaacag atataatctt cttttgttca
781 cccaacaatc ctactggtgc tgctgcatct cgggaccaat taaccaaatt agtcaaattt
841 gcaaaggaca atggatccat tatagtttat gattctgctt atgccatgta catatcagat
901 gacagcccaa aatctatctt tgaaattcct ggagcaaagg aggttgccat tgaaacagca
961 tctttctcca aatatgctgg attcactggt gtgcgtttgg gttggactgt ggttcctaag
1021 gagctccttt tctcagatgg gcatcctgtt gctaaagatt tcaaccgcat agtctgcact
1081 tgcttcaatg gtgcatcaaa catttctcaa gccggtggtt taggttgtct atctccagag
1141 ggtctaaagg ccatgagtga cgttgtcggc ttctacaagg aaaatactaa aattattgtt
1201 gacacattta catcacttgg attcaacgtc tacggtgcca agaatgctcc atatgtgtgg
1261 gtgcacttcc ctggccgtaa ttcttgggat gtcttcgccg aaattcttga gaaggcacat
1321 gtggttacta ctcctggtag cggatttggg cccggtggtg aaggcttcgt aagggtcagt
1381 gcatttgggc acagagagaa cattattgaa gctgcgagaa gactgaagca gctgtacaaa
1441 tgagcagtga tccggccttt atattctcaa cctcttgggg agccatatca aataaaacca
1501 agcagagttc gaagacaaaa tttactctgt cgggctatca gtagatgtta gaattgaaac
1561 ctaatacttt ataggcagtt gttctgttcc gctcggtatt tatccattca gagccatttt
1621 acattctgaa cttctcttgt tgtttagccc tgatgcacct gagtgaatcg caagcttatt
1681 tatctccttt tgctaagttc gtttctacta ctctgcttaa tttgctgctg ccgtataagg
1741 ctcagtgata tctccctgga tgcattgaaa cgttaggcac acttgagtc
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