LOCUS AK069040 1565 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023003B20, full insert
sequence.
ACCESSION AK069040
VERSION AK069040.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1565)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1565
/clone="J023003B20"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 202..1302
/db_xref="Osa1:LOC_Os10g29470"
/db_xref="RAP-DB:Os10g0430200"
/note="(RAP Annotation release2) Similar to Sinapyl
alcohol dehydrogenase"
/note="(Rice Genome Annotation Project) mannitol
dehydrogenase, putative, expressed"
/note="mapping to R10-TIGRv4S1-000387R (Chr.10: short
arm=14974505, long arm=14979907, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG91230.1"
/translation="MAPTAASAAAGEEQQAVGLAARDSSGHLSPFAISRRSTGDDDVA
IKILFCGICHSDLHCIKNEWKHSIYPLVPGHEIAGVVTEVGKNVTRFKAGDRVGVGCM
VNSCRSCESCNNGFENHCPEGVFTYNSVDKDGTVTYGGYSSMVVVHERFVVMFPEAMP
LDVGAPLLCAGITVYTPMKYHGLNAPGKHVGVLGLGGLGHVAVKFARAFGLKVTVISS
SPGKKREALERLGADAFVVSSSAEEMEAARSTMDGVINTVSANTPMAPYLALLKPNGK
MILVGLPENPLEVPPFSLVHGNRTLAGSNIGGMADTQEMIELAAKHGVTADIEVIGAD
DVNTAMERLAKADVRYRFVIDVGNTLHAAAAE"
BASE COUNT 289 a 465 c 494 g 317 t
ORIGIN
1 ggtggacgtt tacgcgtgtg ttgtgtgcgc cagtgaggac ggccacgcac gacgcctctt
61 ctcctctcgc cgtctcgcgc aatcgcgcgg ccacaaataa cgccgctcca ccttttcgct
121 cccggctcct cctcctcctc tcatcctctc ctctcccact ccacacccag gcacccagct
181 cgagcgcgac tcggcaaatc catggctccc acggcggcgt cggcggcggc gggggaggag
241 cagcaggcgg tggggctggc ggcgcgcgac tcctccggcc acctctcccc tttcgccatc
301 tcccggagga gcactggaga tgacgatgtg gcgataaaga ttctgttctg tggaatctgc
361 cactctgacc tgcactgcat caagaatgag tggaagcact ccatctaccc acttgttcct
421 gggcacgaga tcgccggtgt ggtgacggag gtggggaaga acgtcaccag gttcaaggcc
481 ggcgacaggg tcggcgtggg gtgcatggtg aactcgtgcc ggtcatgcga gagctgtaac
541 aatggcttcg agaaccactg cccggagggc gtcttcacct acaactccgt cgacaaggac
601 ggcaccgtca cctacggcgg ttactcgagc atggtggtgg tgcacgagcg cttcgtggtc
661 atgttcccgg aggcgatgcc gctcgacgtc ggcgccccgc tgctgtgcgc cggcatcacc
721 gtgtacaccc ccatgaagta ccacggcctg aacgcgccgg ggaagcacgt cggcgtgctc
781 ggcctgggcg ggctcggcca cgtcgcggtg aagttcgcca gggcgttcgg gttgaaggtg
841 acggtgatca gctcgtcgcc ggggaagaag cgggaggcgc tggagcggct cggcgccgac
901 gcgttcgtcg tgagcagcag cgccgaggag atggaggccg cgaggtccac catggacggc
961 gtcatcaaca cggtctccgc caacaccccc atggcgccgt acctggcgtt gctgaagccc
1021 aacgggaaga tgatcctcgt cggcctcccg gagaatcccc tggaggtccc tcccttctct
1081 ctcgtccacg ggaacaggac tctggcaggg agcaacatcg gcggcatggc ggacacgcag
1141 gagatgatcg agctggcggc gaagcatggc gtgacggcgg acatcgaggt gatcggcgcc
1201 gacgacgtga acacggccat ggagcgcctc gccaaggcgg atgtcaggta tcgcttcgtc
1261 atcgacgtcg ggaacaccct ccacgccgcc gccgccgagt gatggcatcg cctgcaaact
1321 attcgtgtgg tctgtaatct gtatgaaatt gttcatggta cgtacacgat atatagattg
1381 tggcgtgtca tggcgtatag gaatgaaccc gatcgaggaa gctattgttg gtagtctgat
1441 gctagtcagc tcagtgtttg actgtttgca tttacggatt gaaattgagc tttgtgtggc
1501 ctaagtttta ttttctaaag atttcaagtg aatttcgttt tattcgaatg aaattccaga
1561 tcttt
//