LOCUS AK069021 2369 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013170B16, full insert
sequence.
ACCESSION AK069021
VERSION AK069021.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2369)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2369
/clone="J013170B16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 519..1880
/db_xref="Osa1:LOC_Os05g51610"
/db_xref="RAP-DB:Os05g0594200"
/note="(RAP Annotation release2) Similar to Cation/proton
exchanger 1a"
/note="(Rice Genome Annotation Project) vacuolar
cation/proton exchanger 1b, putative, expressed"
/note="mapping to R05-TIGRv4S1-001163R (Chr.5: short
arm=29505386, long arm=29510568, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG91219.1"
/translation="MPVSRMMMESNTMAKEMAVRHHLLPGSPRRRTAHNLSSSSLRKS
SDASLLHKVPCAALRSLLANLNDVLLTTRLFLLFPAVLLAIAATYLHFGQVWVFVLSL
IGLVPLAERLSFLTEQIAFYTGPTVGGLLNATFGNVTEVIIALLALREGKIEVVKCSL
LGSILSNLLLVLGTSLFLAGIANLRAHQPYDTKQAHVNTALLMLAVLCHSLPLMLRYA
VTSGDHAIVSGDAALHLSRACSILMLIAYLAYLFFQLNTHRQLFEPQQVEDDDDDDLV
IAQDDEPVLGFSSAMIWLALMTLLTALLSGYVVSTIEAASESWELSVSFISIILLPIV
GNAAEHAGAVIFALKNKMDITLGVSLGSATQISMFVVPVSVIVAWTMGIPMDLDFNLL
ETGSLFLAILVTAFTLQEGESHYLKGLILVLCYAVISVCFFVIRRRSAGGTDGVHHLD
VIV"
BASE COUNT 514 a 664 c 549 g 642 t
ORIGIN
1 ttgggattgg tttctttctg ctctgttgca gctccgttgt ctatggtagg taccttttgg
61 acggaggttt tgcatttgcc tagttactag taactgcata attaacagga ggagtactac
121 caagaatgca tactaattat tcgcgtgata ttttgtacgt ttaagtttag agaacccggg
181 attcgaccag accatcagtc cactctctct ctctctctgc ttcttcttgt gttgtgcttg
241 tgcctcctca ttattaatat ctgtactcca tattctacta ctgcatgctg gagtactctg
301 gtcatggagc atttgacatt tgcatccacc ccgatgagct gagctgctcc attaatatac
361 tattcctcct caattagtca ttcactacat acatacagca aaatcctagc accacgacgg
421 cggccgcatt tgtatgaaat cgatagatcg tctctctctc tctctcatcc aaccaaccac
481 gcacagcgac tcagcgagcg aggaacaact agagcttgat gccagtgtcg cggatgatga
541 tggagtcgaa tacgatggcc aaggagatgg ccgtgcggca ccacctcctt ccggggtctc
601 ctcgccgccg caccgcacac aacctctcat cttcctccct ccgcaaaagc tccgacgcct
661 ccctcctcca caaggttccc tgcgccgccc tccgctccct cctcgccaat ctcaacgacg
721 tcctcctcac caccaggctc ttcctcctct tccccgccgt cctcctcgcc atcgccgcca
781 cttacctcca cttcggacag gtgtgggtgt ttgtgcttag cttaatcggc ctcgttcctc
841 ttgctgagcg actcagcttc ctcaccgagc agattgcatt ttacaccggt cctactgtgg
901 gaggactact gaacgcgaca tttgggaacg tgacggaggt gataatcgcg ctgttggcgc
961 tgcgagaagg aaagattgag gtggtgaaat gctccctgct gggatccatc ctctccaacc
1021 tgctgcttgt cctcggcacc tccctcttcc tcgccggcat cgccaacctc cgcgcccacc
1081 agccgtacga caccaagcaa gctcacgtca acaccgccct cctcatgctc gccgtcctct
1141 gccactccct gccgctcatg ctcaggtacg ccgtcacctc cggcgaccac gccatcgtct
1201 ccggcgacgc cgccctccac ctgtcgcgtg cctgcagcat cctcatgctc atcgcctacc
1261 tggcctacct cttcttccaa ctcaacacgc atcgccagct gtttgagccc caacaggttg
1321 aggatgatga cgacgatgat ttagtgatcg ctcaagatga tgagccagta ctgggattct
1381 cgagtgccat gatttggctg gctctcatga ctctcctgac tgcgctcttg tcagggtatg
1441 ttgtgagcac aattgaggcg gcctcagaat catgggaact atcagtgagc ttcattagca
1501 tcatcttgct tcccatcgtt gggaacgcag cagagcatgc cggtgccgtc atatttgctc
1561 tcaagaacaa gatggatatt actctcggag tgtctttggg ctctgccaca cagatctcca
1621 tgtttgtggt tccagtgagt gtgattgtag cctggactat gggaatccca atggatcttg
1681 atttcaacct gctggagact ggctctctgt ttctagcaat attagtgaca gccttcaccc
1741 tccaggaggg agaatcacat tatctgaagg gattgattct tgtcctgtgc tacgctgtca
1801 tcagcgtgtg ctttttcgtt ataagacggc gttctgcagg agggacggac ggtgttcacc
1861 atctggatgt gattgtgtag caaattacta acaggcagac cgcagaagca gaaacgtacg
1921 tacatgcgcc taacatatat atggagtccg tacagtacgt gctagctacg gagtactcct
1981 gtacactact gtactactgc ttgcacaaga gaagaggatc gagtaccgta gctagcacag
2041 gcggcggaga cgagacgatc tgcttgcttg aggaggcagc cgatcgaagc cggactgggc
2101 ggagatcgat gcatggatcc agtttgttta gactgacgga cgatagagga tgataccacg
2161 acccaaccat ccgtccctgc aattggctgg tttggtcatt caaataggga atcacaattg
2221 ggttttaatg ggttgcttta gtttaggtcg ttttggaatg gtttgtttat atttatcttt
2281 ttcaaaggag tttgtttagg tttatcgaac tactagaata tacatccatc ttaagattat
2341 tacattttaa aataaagata tatagtatg
//