LOCUS AK068902 2604 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023001H05, full insert sequence. ACCESSION AK068902 VERSION AK068902.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2604) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2604 /clone="J023001H05" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 164..2473 /db_xref="Osa1:LOC_Os12g30520" /db_xref="RAP-DB:Os12g0488900" /note="(RAP Annotation release2) Armadillo-like helical domain containing protein" /note="(Rice Genome Annotation Project) RNA binding protein, putative, expressed" /note="mapping to R12-TIGRv4S1-000533R (Chr.12: short arm=18286632, long arm=18290492, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG91150.1" /translation="MRAPPARVGDCCPATEMDEVPGNQEDPRLGAYADKITDAMFADH VELGSHYAGDSSSEAGWAPMIARMQSQSQLGSNQLGVSFENGSLPDDPASLASAFKNM SLGFRDFTVGTPANPVSVAPLGGHYPASHVISSGETTMNSFHQQEFAQDGFRPSSLNP NVAEYMKPKYGVHNVQMCTGLHGSDYVSGDPYNLPSSASPLQKQYFIDGQFRANAPYQ QTGSNFMRQDFDADSHYLLQSQYAYQQMPQVAGSDVHWVRSNQHGVHSSIPAASPYLR TPMVGQQAHSSADTYWNGAAISHGNNQLNSTFVNNCSCIIYPDCSREICEYCQMKQAE KLKHRYMFRRSSKGFLQPQIFDKVNIKCFPGKTMVKSDDINSARNIQSVFEPNGRIEM NQRINQHGHNQHLNIQGNDFLLFDRLNSQALSPVESEYGLAMKIPQMSYSSVDEVVGK IHLLAKDQNGCRFLQRIFTEGTSENVKKVFDGIIEHIGELVVDPFGNYLVQKLLEECN HDQKMHIVYEITKRPGQLIKFSCDMHGTRVVQKVIETINSPDEVSMVVCALSSGAITL MMDANGCHVALRCLQKFSHEHKAFLLNVAMEYYFELAQDRQGCCIIQKCILHANKEQK NQLLYNITSRALELSEHQYGNYVVQYILDLHISWATDEILDKLEDHFGSLSMQKSSSN VVEKCLKEASWPKRVKIIHELINDPKLLHILIDPYGNYVIQTALKECEDAAVRAVLIG AIRPHVAALRNNMFGKRILSKTYLKNRKH" BASE COUNT 716 a 573 c 603 g 712 t ORIGIN 1 gctctcctat tttcatcagc ttcccttgca agccttgctc ctcctcctcc tcctcctcca 61 aagtcccccc aaaatcggcg cctccccgtc caattctccg ccgcgatccg ctccccgaac 121 ccgccggagc gcgcaggacc gcgcggggac gccccgggcg caaatgcgcg cgccccctgc 181 gagggttgga gattgttgtc ctgctactga gatggatgaa gtgccgggta atcaagaaga 241 tcccagactt ggggcctatg ccgacaagat cactgatgcg atgtttgcgg accatgtgga 301 gttggggtct cattatgcag gtgattcttc ttcagaggca ggatgggctc caatgatcgc 361 gagaatgcag tcgcagtcgc agctggggag taaccagctt ggtgtctcct ttgagaatgg 421 cagtttgcca gatgacccgg cgtcgttggc atcggcattc aagaacatga gcttgggatt 481 cagggatttt actgttggca ctcctgctaa tcctgtcagt gttgcacccc taggtggaca 541 ttatcctgca agtcatgtga tttcatctgg tgagaccaca atgaactcat ttcatcagca 601 ggagtttgct caagatggtt tcaggccttc atctctgaat cccaatgttg ctgaatacat 661 gaagccgaag tacggtgtac acaatgttca gatgtgcacc gggctgcatg gctcggatta 721 tgtttctggg gacccgtata atctaccatc atcagcttca cctttacaga aacagtattt 781 tattgatggg caattccggg ctaatgcacc atatcagcag actggctcga atttcatgag 841 gcaagatttt gatgctgaca gtcattatct tttgcaatcc cagtatgctt atcagcaaat 901 gccacaggtc gctggatctg atgttcattg ggttagaagc aaccaacatg gtgttcactc 961 ttctatccct gcagcttcac cttatctcag gacaccaatg gttggtcagc aagcacatag 1021 cagtgctgat acttactgga atggtgctgc tatttcacat ggaaacaacc agctgaattc 1081 cacatttgtg aacaattgct catgtataat ttaccctgat tgttcacgcg aaatctgcga 1141 atattgccag atgaagcaag cagaaaagtt gaagcatcgt tatatgttca ggcgttcatc 1201 caaaggtttc ctgcagcctc agatttttga taaggtcaac attaaatgtt ttcctggaaa 1261 gacgatggtg aagtctgatg atataaattc agcgagaaat attcagtctg tctttgaacc 1321 taatggccgc attgaaatga atcagagaat taaccagcat ggacacaatc aacatcttaa 1381 tattcagggc aacgatttct tgctttttga caggctaaac tcccaggctc tgtcacctgt 1441 ggaatctgaa tatggtttgg ccatgaaaat tcctcaaatg agttatagtt cagtagatga 1501 agttgttggg aaaattcatc tcttggcaaa ggatcagaat ggctgccgct tcctacagag 1561 gatatttaca gaaggtactt cggagaatgt taaaaaggtc tttgatggaa tcattgaaca 1621 tattggtgaa cttgtggtcg atccatttgg aaactacttg gtacaaaagc tacttgaaga 1681 gtgcaaccat gatcagaaga tgcatatagt ctatgaaata accaaaagac cagggcagct 1741 tattaaattt tcatgcgaca tgcatgggac acgtgtagtg caaaaggtga tagaaacaat 1801 aaactcgcca gatgaagttt ccatggttgt atgtgccctg agctctggtg ccatcacttt 1861 gatgatggat gcaaatggct gtcatgttgc actccgctgc ttgcaaaaat tctcacatga 1921 gcacaaagca ttccttctta atgtggccat ggaatattac tttgagctag cccaggatcg 1981 tcaaggttgt tgtatcattc aaaaatgcat tcttcatgca aataaggaac agaagaacca 2041 gttgttgtac aatatcactt ccagggctct tgagctgtca gagcatcagt atgggaacta 2101 tgttgtacag tatattcttg atctccacat ttcatgggcg acagatgaaa tactggacaa 2161 gctggaagat catttcggat ctctgtcgat gcaaaaaagt agcagcaatg tggtagagaa 2221 atgtttaaaa gaagcatcgt ggcctaaacg tgttaaaatc attcacgagc ttatcaatga 2281 ccctaagtta ctgcatatct tgatcgaccc atatgggaac tatgtgatcc aaacagcgct 2341 caaggagtgt gaggatgctg cagtacgcgc tgtgctgatc ggagccatta ggccacatgt 2401 tgctgctctt cgaaacaaca tgtttgggaa gagaattctg tcaaaaactt acctgaagaa 2461 caggaagcac taatcttgca cctttgggct tttcttctgg agtccacctg tcaggcaatg 2521 tgcataaggt gcaacactaa tgtatctgta agaatcatat gctacagaat agatccactc 2581 aaattaagta gattaagaaa gatg //