LOCUS       AK068902                2604 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J023001H05, full insert
            sequence.
ACCESSION   AK068902
VERSION     AK068902.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 2604)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..2604
                     /clone="J023001H05"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             164..2473
                     /db_xref="Osa1:LOC_Os12g30520"
                     /db_xref="RAP-DB:Os12g0488900"
                     /note="(RAP Annotation release2) Armadillo-like helical
                     domain containing protein"
                     /note="(Rice Genome Annotation Project) RNA binding
                     protein, putative, expressed"
                     /note="mapping to R12-TIGRv4S1-000533R (Chr.12: short
                     arm=18286632, long arm=18290492, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG91150.1"
                     /translation="MRAPPARVGDCCPATEMDEVPGNQEDPRLGAYADKITDAMFADH
                     VELGSHYAGDSSSEAGWAPMIARMQSQSQLGSNQLGVSFENGSLPDDPASLASAFKNM
                     SLGFRDFTVGTPANPVSVAPLGGHYPASHVISSGETTMNSFHQQEFAQDGFRPSSLNP
                     NVAEYMKPKYGVHNVQMCTGLHGSDYVSGDPYNLPSSASPLQKQYFIDGQFRANAPYQ
                     QTGSNFMRQDFDADSHYLLQSQYAYQQMPQVAGSDVHWVRSNQHGVHSSIPAASPYLR
                     TPMVGQQAHSSADTYWNGAAISHGNNQLNSTFVNNCSCIIYPDCSREICEYCQMKQAE
                     KLKHRYMFRRSSKGFLQPQIFDKVNIKCFPGKTMVKSDDINSARNIQSVFEPNGRIEM
                     NQRINQHGHNQHLNIQGNDFLLFDRLNSQALSPVESEYGLAMKIPQMSYSSVDEVVGK
                     IHLLAKDQNGCRFLQRIFTEGTSENVKKVFDGIIEHIGELVVDPFGNYLVQKLLEECN
                     HDQKMHIVYEITKRPGQLIKFSCDMHGTRVVQKVIETINSPDEVSMVVCALSSGAITL
                     MMDANGCHVALRCLQKFSHEHKAFLLNVAMEYYFELAQDRQGCCIIQKCILHANKEQK
                     NQLLYNITSRALELSEHQYGNYVVQYILDLHISWATDEILDKLEDHFGSLSMQKSSSN
                     VVEKCLKEASWPKRVKIIHELINDPKLLHILIDPYGNYVIQTALKECEDAAVRAVLIG
                     AIRPHVAALRNNMFGKRILSKTYLKNRKH"
BASE COUNT          716 a          573 c          603 g          712 t
ORIGIN      
        1 gctctcctat tttcatcagc ttcccttgca agccttgctc ctcctcctcc tcctcctcca
       61 aagtcccccc aaaatcggcg cctccccgtc caattctccg ccgcgatccg ctccccgaac
      121 ccgccggagc gcgcaggacc gcgcggggac gccccgggcg caaatgcgcg cgccccctgc
      181 gagggttgga gattgttgtc ctgctactga gatggatgaa gtgccgggta atcaagaaga
      241 tcccagactt ggggcctatg ccgacaagat cactgatgcg atgtttgcgg accatgtgga
      301 gttggggtct cattatgcag gtgattcttc ttcagaggca ggatgggctc caatgatcgc
      361 gagaatgcag tcgcagtcgc agctggggag taaccagctt ggtgtctcct ttgagaatgg
      421 cagtttgcca gatgacccgg cgtcgttggc atcggcattc aagaacatga gcttgggatt
      481 cagggatttt actgttggca ctcctgctaa tcctgtcagt gttgcacccc taggtggaca
      541 ttatcctgca agtcatgtga tttcatctgg tgagaccaca atgaactcat ttcatcagca
      601 ggagtttgct caagatggtt tcaggccttc atctctgaat cccaatgttg ctgaatacat
      661 gaagccgaag tacggtgtac acaatgttca gatgtgcacc gggctgcatg gctcggatta
      721 tgtttctggg gacccgtata atctaccatc atcagcttca cctttacaga aacagtattt
      781 tattgatggg caattccggg ctaatgcacc atatcagcag actggctcga atttcatgag
      841 gcaagatttt gatgctgaca gtcattatct tttgcaatcc cagtatgctt atcagcaaat
      901 gccacaggtc gctggatctg atgttcattg ggttagaagc aaccaacatg gtgttcactc
      961 ttctatccct gcagcttcac cttatctcag gacaccaatg gttggtcagc aagcacatag
     1021 cagtgctgat acttactgga atggtgctgc tatttcacat ggaaacaacc agctgaattc
     1081 cacatttgtg aacaattgct catgtataat ttaccctgat tgttcacgcg aaatctgcga
     1141 atattgccag atgaagcaag cagaaaagtt gaagcatcgt tatatgttca ggcgttcatc
     1201 caaaggtttc ctgcagcctc agatttttga taaggtcaac attaaatgtt ttcctggaaa
     1261 gacgatggtg aagtctgatg atataaattc agcgagaaat attcagtctg tctttgaacc
     1321 taatggccgc attgaaatga atcagagaat taaccagcat ggacacaatc aacatcttaa
     1381 tattcagggc aacgatttct tgctttttga caggctaaac tcccaggctc tgtcacctgt
     1441 ggaatctgaa tatggtttgg ccatgaaaat tcctcaaatg agttatagtt cagtagatga
     1501 agttgttggg aaaattcatc tcttggcaaa ggatcagaat ggctgccgct tcctacagag
     1561 gatatttaca gaaggtactt cggagaatgt taaaaaggtc tttgatggaa tcattgaaca
     1621 tattggtgaa cttgtggtcg atccatttgg aaactacttg gtacaaaagc tacttgaaga
     1681 gtgcaaccat gatcagaaga tgcatatagt ctatgaaata accaaaagac cagggcagct
     1741 tattaaattt tcatgcgaca tgcatgggac acgtgtagtg caaaaggtga tagaaacaat
     1801 aaactcgcca gatgaagttt ccatggttgt atgtgccctg agctctggtg ccatcacttt
     1861 gatgatggat gcaaatggct gtcatgttgc actccgctgc ttgcaaaaat tctcacatga
     1921 gcacaaagca ttccttctta atgtggccat ggaatattac tttgagctag cccaggatcg
     1981 tcaaggttgt tgtatcattc aaaaatgcat tcttcatgca aataaggaac agaagaacca
     2041 gttgttgtac aatatcactt ccagggctct tgagctgtca gagcatcagt atgggaacta
     2101 tgttgtacag tatattcttg atctccacat ttcatgggcg acagatgaaa tactggacaa
     2161 gctggaagat catttcggat ctctgtcgat gcaaaaaagt agcagcaatg tggtagagaa
     2221 atgtttaaaa gaagcatcgt ggcctaaacg tgttaaaatc attcacgagc ttatcaatga
     2281 ccctaagtta ctgcatatct tgatcgaccc atatgggaac tatgtgatcc aaacagcgct
     2341 caaggagtgt gaggatgctg cagtacgcgc tgtgctgatc ggagccatta ggccacatgt
     2401 tgctgctctt cgaaacaaca tgtttgggaa gagaattctg tcaaaaactt acctgaagaa
     2461 caggaagcac taatcttgca cctttgggct tttcttctgg agtccacctg tcaggcaatg
     2521 tgcataaggt gcaacactaa tgtatctgta agaatcatat gctacagaat agatccactc
     2581 aaattaagta gattaagaaa gatg
//