LOCUS AK068831 1725 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013158G13, full insert
sequence.
ACCESSION AK068831
VERSION AK068831.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1725)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1725
/clone="J013158G13"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1725
/db_xref="Osa1:LOC_Os06g50880"
/db_xref="RAP-DB:Os06g0724500"
/note="(RAP Annotation release2) WD40-like domain
containing protein"
/note="(Rice Genome Annotation Project) nucleotide
binding protein, putative, expressed"
/note="mapping to R06-TIGRv4S1-001213R (Chr.6: short
arm=30775908, long arm=30778588, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 457 a 333 c 468 g 467 t
ORIGIN
1 tgagaaggcc tcgcggcgga ggaggaagaa ggaagaagaa ggcgaggcga tgccgcggga
61 ggggacgcgg atggcggggc tgtgggagcg cgaggtcggc tgcctcccgc ccaagctctt
121 cgccaactcc gtcatggcct cccaggactt tgtgcggtct ctcggtgtcc agaagaggct
181 gcggaagcac aggggctgtg tgaataccat cagctttaac gaggatggga gcttgctcct
241 gtccggttcg gacgatcggg ccgctgtact gtggaattgg caagagggga cgcctacctt
301 cgcgttccac actggccaca gcgacaatgt gttccatgct ctgttcatgc ccttctcagg
361 tgaccggagc atcatcacat gcgctgctga tggacaggtg aggcattcgc aaatacaaga
421 aggtggtcgt gtaattacaa atgagctagt tgatacagag gtagcagtgc acaaactagc
481 tattgagcct ggaaatcctc acacattctt tagctgcgga gataatggct ccgtttttct
541 ttttgaccta agggagaaat atgttgctga actctttaaa tgcgcagaag ttgatcattt
601 tggtggtgat accattgaac tctatgctat tgccatagac ccgagaaagc ctagttgttt
661 tgcagttgct ggatctgatg agtatgtgag aatatatgat agccgcaaga ttgatgtgaa
721 tgggaattct agttttggtc ggccaattga atacttttgc cctccacata tgatgggcga
781 aaacaaagat ggaatatctg gtttggcatt ctcgcagacc agcgaactat tggcatccta
841 tagttatgat aacatctacc ttttctcgag agaacatggc ttacacttca acaatattga
901 ggtaggaaaa cgactcctga tggatgagat tgaaggagac tgccatataa atacagctcc
961 attacccttt tgtagagata agttgcctac acctcaaata ttcaagggac atcgtaacaa
1021 gcacaccatg aagggtgtta atttccttgg gcccaactgt gactatgtta ccactggatc
1081 agactgtggc cgtgtattta tttggaggaa gaaggatggg gagcttatgc gggttatgaa
1141 aggggataaa cagattgtga actgtgttga gcagcaccct tatgggattg ttattgcaaa
1201 ctgtggcatt gataaagata tcaagatttg ggctcctggt ggaagtgaga accctgacga
1261 ggttgagaca gattcttgtt gctctgatat cagtgagtcc tatgactcgg tttactttga
1321 tgattacata ttttcctcgg attttgattc atctgaagag gacgacgaag acgacgacga
1381 cgatgatgat gatgatgacg atgacgaaga agatggcctt agtgttagta tcaacgaaga
1441 catgagctat gaagagaaag atgcagccag cgaccatgac agcgatgttt aaaggttgca
1501 ttcagctatt atgagaccgt aggatggttc agtcttagaa catggtcagt taggggatca
1561 tcgacagttt tgtatgatgt atgccttagg ttgttttatc atgtgttcct ttctcagtcc
1621 tcggccgtat tgcttgtaca tacatataca tatgcctgag atagctaagc aaaagcatac
1681 ttacatgtgg acaaatttga gtggatggag aattttgtgt atatt
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