LOCUS AK068801 1944 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013160I05, full insert sequence. ACCESSION AK068801 VERSION AK068801.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1944) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1944 /clone="J013160I05" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1944 /db_xref="Osa1:LOC_Os02g56040" /db_xref="RAP-DB:Os02g0804500" /note="(RAP Annotation release2) Chaperone DnaJ family protein" /note="(Rice Genome Annotation Project) chaperone protein dnaJ, putative, expressed" /note="mapping to R02-TIGRv4S1-001544R (Chr.2: short arm=34294760, long arm=34301744, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 504 a 409 c 528 g 503 t ORIGIN 1 gtgtcggctc tagaagcttc tagaaggcgc agctgcagcg ctggctaatg gcgttcgcga 61 cctccacgct cccattcgcg ccatccaacc cctcgccgtc ctcccgctcc gccgcagcgg 121 ctttctctcc ccgcggcggg gtccacttcg ccgccgctag gagcggcctc ccgctcgcgt 181 gcgccgcgcc gaggcaccga gggaggcctc ctccgaggag gcgccgcgga gggtgcctgg 241 tggtgtgggc gtccgccgac tactacgcca cgctcggcgt gccgcgctcc gcgagcaaca 301 aggacatcaa ggccgcctac cggaagcttg cgcgccagta ccatcctgat gtcaataagg 361 aacctggagc aaccgataag ttcaaagaga taagtgcagc atatgaggtg ctatcagatg 421 aaaagaagag ggcgctgtat gatcaatatg gtgaagctgg ggttaggagt gcggttggag 481 gctcagctgg agcttacaca agtaatcctt ttgatctatt tgagacattc tttggagcaa 541 gcatgggtgg cttttctggt atggaccagg gaacatttag gacacgcagg aggagcactg 601 ctgttcaggg ggaagacatc agatatgatg tgaatctggg gttctcagag gcaatatttg 661 gaacagaaaa ggatattata ttatctcatt tggagacatg cgatgcatgt gctggttctg 721 gatcaaagat tgggtcgaaa atgagaatat gctccacatg tggtggtcga gggcaagtaa 781 tgagaactga gcagacacca tttggtctgt tctcccaggt ttcaatttgc cccacctgtg 841 caggagaggg tgaagtcatt tcagagtatt gcaagaaatg tgctggagag gggcgtgttc 901 gtgttagaaa ggagatcaaa gtaaaaattc ctccaggtgt tagcaaaggt agtactcttc 961 gtgtacgtgg tgaaggtgat gcgggaccaa aaggaggacc tcctggagat ctttttgttt 1021 gccttgatat agaggagcca gcagatatta aaagggatgg tatcaacttg tattcaactg 1081 tttcagtaag ctacattgaa gctattctgg gcactgttaa aaaggtcaga actgttgatg 1141 gaaatagtga acttagaata cctccaggta cccaacctgg tgatgtagtg gttctagcaa 1201 agcaaggtgt tccatcattg aataaaccat ctgctcgtgg tgatcatcta ttcactatta 1261 aggtcactat acccaaacgt ataagcggac gagaaaagga gctacttgag gaactggctt 1321 ctttgagcaa tggtggtttt gctggtgcac ctgtgaagcc aaaatccata cgccaagaga 1381 atgaaactac tgttgcccaa gaaaattcgg atcaacctga tgaaggggag ggtgactggt 1441 tgaagaaact tcaagatttt gcaggatcca ttgctaatgg tgctgccaag tggctaaaag 1501 acaaccttta gcctgtaaat agttaccgcg gaatgcattt atattaatcg ctgttatggt 1561 gtagtccaat ctgctattct tcaattcatt ggatcccacg agctgttgca tttgttttgg 1621 agaggctcaa agttctcagg ctgtgaagtg gcaacggaga ggctgaatct gttaattaat 1681 tccatcggca acgttcttat tttggtatgc ttgtaaagtg gcatgatttt ttatgtagtt 1741 gcagttatca ttccctagag catgtgatgg ttttacgtca cttgctgctg atactgaatt 1801 cagtaaagat aatgcactgt aaatatatat ttcatgcagt agagcatctt gaaatctcag 1861 gtatgtactc tgtgggtaag caaccgtgag gtgtgtcgtt ctgaactaga gatatttaaa 1921 tccagaacaa gagcacccat atcc //