LOCUS AK068767 3529 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013168B07, full insert
sequence.
ACCESSION AK068767
VERSION AK068767.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3529)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3529
/clone="J013168B07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3529
/db_xref="Osa1:LOC_Os04g53190"
/note="(Rice Genome Annotation Project) lysine-specific
histone demethylase 1, putative, expressed"
/note="mapping to R04-TIGRv4S1-001099R (Chr.4: short
arm=31450184, long arm=31454408, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 924 a 708 c 823 g 1074 t
ORIGIN
1 gtgcacttaa tgcaacctta gtgcaaaaac cgaaattttc cactctctag gtggttgtag
61 tgataaaatt gctttgataa tctaaacaca ctgagttgct tatggttgtt gggaggtgcc
121 tagtgggcca gatgaaagag acatcagcca tcgtggatga gttcccatat tcctctgtcg
181 gtggtaggaa gagaaaacaa aacattagct gtttacacct gttgtaccag cgcctcaacc
241 aattggaacc ttctagggtt tttctcatgg cgagagaaag tcctccatgt ggagttgtag
301 gctcctgctg cgccttttag ttcctgaaga gcttgcaatt tgtaagactc tagtgtaaac
361 cgttcatgca agcactcaca tactggttgc agttgaggtc taacaacatg cagatgcagt
421 agtgcttgaa ctttaaatat catatactta ctattctaaa attagatcag caaaagtgca
481 tgtcatgtta agtttagtgc catgcggaca ttctatgcat gcatgattca tatagtattg
541 taatgcatgt agggtgcaga ttattatatg agaatattcg ctggtggatc tagttatcta
601 agtttcttta tcttccaatg ccaccatttt cttattttac tgttcagctc ttataaaatg
661 ttttttctgt tggctttcgt tgctgtctca tttatggata tctttacttt tggattgtgc
721 cttttagtgc gcctatagtc attgtgtgag atgttcggtg gccattattt tttgcttgtt
781 aagtgctctg aagcatatcc ggcagagggt tgtctcgcta aaagattgtc taatttatag
841 tatgccacca aataattcca agataaacag tatatagcca caaattcatg tcatgtctat
901 cgcccattag tctgaatttg caccatgtcc acataactag aaagaacagt acaataataa
961 tattgtgtcc ttgccttttg cacatccttt gaggtcattg tgttttaacg gagagtcttt
1021 ggtgtgcctg cccagcgaaa aatttgatca gtcctacatc tcagcttcca atgtgtagct
1081 acagaccaag cggttaggtt tctgtgggga atcaacagaa tgttaaaatt gtcctgtctt
1141 acctcaccat cattgttctg agacagggga acatgcctca ctactaaccc tccatgatgg
1201 agggggtaga ggagggttga tgtgagaaga acaggcgata tcggcaattt catcacttgg
1261 taggcttctt tatgttaatt ctgtataaac tgatttttat catttggagg tataaaaccc
1321 cctttcacaa tgaagcaaac cgttagcctt aaggtgcaaa acctttagat tcatgagaca
1381 caagcatcca tccaactaca tcaaacatgt gaaactctca ggttgcttcc tgtgttgaca
1441 gtcatataaa gaacatatga tggtacatgt gccagccagt atttgcactt tagatttaag
1501 ctgaatgagc tcctttttca atgcaatatt ttggcaagat aataaccaaa aattgacaca
1561 tcattattat tttataatgt tttaactttt tattactaca ctttgtcact ctcattgagg
1621 tccctttttt ttttcctttt tttttttgta aaatccaggt tcatatggtg aaaatgttag
1681 gagaaagtcc cacacacctt ctgctattgt tatcggcagt gggtttgcag gcattgctgc
1741 agccaacgct ctcaggaatg catcatttga ggttgttctt ctagaatctc gtgacaggat
1801 aggtggtaga attcacactg attactcttt tggctttcct gttgatctgg gagcatcctg
1861 gcttcatggt gtttgtgagg aaaatcccct ggcaccaatt attggaaggc ttggacttcc
1921 actgtatcgc acaagtggag atgactctgt gctgtttgat catgaccttg agaggttact
1981 agagctagtt tattttgtat gtaacttgag agatgatgga ccataataat caaccattta
2041 acatgttttt tccctcagtt atgctctcta tgacactaag ggccatcaag ttccccaaga
2101 gctggtagaa aagataggga aggtttttga gactatattg gaagagactg gcaaactgag
2161 ggaagaaact aaggaagaca tttctattgc gaaggccatt gcaattgtta tggagagaaa
2221 tccacacttg aggcaagaag ggattgctca tgatgttctt cagtggtatt tgtgccgcat
2281 ggaaggttgg tttgctactg atgcggacgc aatctctctt cagggttggg accaggaggt
2341 actgcttcct ggtggccatg gtctcatggt tcgtggatat cgtccagtaa taaatactct
2401 ggcaaaaggc ctagatatac gccttggcca cagggttgtt gagattgttc gccacaggaa
2461 tagggtggag gttactgtaa gcagtggtaa aacatttgtt gcggatgctg cagtcattgc
2521 tgtcccctta ggtgttctta aagcaaacac cattaaattt gaacctaggc tgccagagtg
2581 gaaggaggaa gcaataagag aactctcagt tggagtcgag aacaaaataa ttctccactt
2641 cagcgaggtt ttctggccta atgtggagtt ccttggagta gtttcatcca ccacatatgg
2701 ctgcagctat ttcctcaacc tccacaaggc tactggccat cctgttctag tttacatgcc
2761 tgcgggtcgg cttgcatgtg acattgaaaa gctgtcagat gaggctgctg cccaatttgc
2821 cttctctcag ctgaagaaga tcctgcccaa cgctgccgag ccgatacatt acctagtgtc
2881 acattggggc tcagacgaga atacacttgg atcctacacc ttcgatgggg tgggcaaacc
2941 tcgtgacctg tatgagaagc tgcggatccc agtcgataac ctattctttg ctggagaagc
3001 caccagtgtc cagtacactg gcacggtgca tggcgccttc tccactggtc tgatggcagc
3061 tgaggagtgc cgaatgaggg ttcttgagcg gttcagggag ctggacatgc tggagatgtg
3121 ccaccctgca atgggggagc agaccgccac tgtctcagtc ccactgctca tctcccggct
3181 gtgaacagac caggagctgc acaaaaatta tagtcttcta aggccatttg gcacttggca
3241 cccggcgagc gcactaagcc attcccctga ttgctcgagg aaggcagcat tggagcaatt
3301 atcttatttg cttctccttg gcatgaggag tgtgctggtg cagcttgcgg tgcgctaaat
3361 aaagtcactg tgaaaatgga gtgtgggagt ctggtgtgta ttgttgagta taaaatgagg
3421 gagtcaatat gtagttaagc agggattacg gacaatgtga gccatcatta ctgaacaaga
3481 tggtgtatgt gtgacgaaca attaatttaa acgatcgata ttgaaaatg
//