LOCUS AK068749 1520 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013158C23, full insert sequence. ACCESSION AK068749 VERSION AK068749.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1520) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1520 /clone="J013158C23" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 175..1257 /db_xref="Osa1:LOC_Os04g46580" /db_xref="RAP-DB:Os04g0551500" /note="(RAP Annotation release2) SBP domain containing protein" /note="(Rice Genome Annotation Project) SBP domain containing protein, expressed" /note="mapping to R04-TIGRv4S1-000837F (Chr.4: short arm=27395680, long arm=27398906, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG91066.1" /translation="MEGNGCGGSGATPRGVVGMHWAPVVTSPPSPQPPFLPPAPCRPD VQMQQQGGLTCLKLGKRPCFWGGDGAGQVAQGSGGGGGGGGGGSADQGKRKEKAATAV PVVPRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAE FDDAKKSCRRRLAGHNERRRRSNASEAMARGSAHPHGMPVLGHGFPPYGLPTSSAGAL SLLSSARATGPWLMPTPDISARSSAALDELIAENRAALLSWQFFSDRQPPPAGRPTGR SPGSETAGGWHAHLQARPPPPGAGGQHENQSGHVTLDLMQATTAAGGSGAPFRPVPAR PPKEGGDAGCTSDAWTPSPMEGARVV" BASE COUNT 236 a 511 c 542 g 231 t ORIGIN 1 gggttacaac cgccgccgca gcctttttcc caatcggcgc tagttttcga tccgccgccg 61 tcggccggag cgaagccaag cccgcgcgac caggtggctg ctgctgtgta acgacgctag 121 ctagcttagc tgcggtacgt ttacacatag gtccgtccgt gtgcggctgc caccatggaa 181 ggaaacggct gcggcggaag cggggcgaca ccacgtggtg tcgttgggat gcactgggct 241 cccgtcgtca cctcgccgcc tagcccgcag ccgccgttcc tcccgccggc gccatgcagg 301 cccgacgtcc agatgcaaca gcaaggcggg ctgacctgcc tcaagctcgg gaagcggccg 361 tgcttctggg gtggcgacgg cgccggccag gtggcgcagg ggagcggcgg cggcggaggc 421 ggaggcggtg gtggttccgc ggatcagggg aagaggaagg agaaggcggc gacggcggtg 481 ccggtggtgc cccgttgcca ggtggagggg tgcgacatta cgctccaggg agtcaaggag 541 taccaccggc ggcacaaggt gtgcgaggtg cacgccaagg ccccgagggt cgtcgtgcac 601 ggcaccgagc agcgcttctg ccagcaatgc agccggttcc acgtgctcgc ggagtttgac 661 gacgccaaga agagctgccg gcggcggctg gccgggcaca acgagaggcg gcggaggagc 721 aacgccagcg aggccatggc caggggctct gcgcacccac acggtatgcc ggtgctggga 781 cacggtttcc cgccgtacgg cctgccgacg tcgtcggctg gtgctctctc tcttctgtca 841 tcggctagag ccaccggccc atggctgatg ccgacgcccg acatctccgc ccgctcaagc 901 gcggcgctcg acgagctcat cgccgagaac cgcgcggccc tcctctcgtg gcaattcttc 961 tccgaccgac agccgccacc agctggccgt ccaacgggcc gcagcccggg ctccgaaacg 1021 gccggtggct ggcacgcgca cctgcaggcg cggccgccac cgcccggcgc cggagggcag 1081 cacgagaatc agtcggggca cgtgacgctc gacctcatgc aggccaccac cgcggcagga 1141 ggcagcggcg cgccgttccg gcccgtgcca gcgaggcccc ccaaggaggg cggcgacgcc 1201 ggctgcacct ccgacgcgtg gacgccgtcg cccatggagg gcgcccgcgt ggtctgagtg 1261 tccgacctgc cagccgcgac gtcgccgcgc gtgcaccacg gtccctagct cccgtgtcag 1321 ctgggcgtgg gaagcgatcg atcagtggtg ggcgcgtgcg cacggctgga gctctgtccc 1381 gacgccgcgc gcagccgtgc aatcaacttg agttcgttgg acaatagtgt ctcgtctcgt 1441 agcaatctat cccgatgtag cagtactggt gcagtggtgg tggtggtgcc actagctagc 1501 aatgttctat tttttcgctc //