LOCUS       AK068749                1520 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J013158C23, full insert
            sequence.
ACCESSION   AK068749
VERSION     AK068749.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1520
                     /clone="J013158C23"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             175..1257
                     /db_xref="Osa1:LOC_Os04g46580"
                     /db_xref="RAP-DB:Os04g0551500"
                     /note="(RAP Annotation release2) SBP domain containing
                     protein"
                     /note="(Rice Genome Annotation Project) SBP domain
                     containing protein, expressed"
                     /note="mapping to R04-TIGRv4S1-000837F (Chr.4: short
                     arm=27395680, long arm=27398906, direction=forward) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG91066.1"
                     /translation="MEGNGCGGSGATPRGVVGMHWAPVVTSPPSPQPPFLPPAPCRPD
                     VQMQQQGGLTCLKLGKRPCFWGGDGAGQVAQGSGGGGGGGGGGSADQGKRKEKAATAV
                     PVVPRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAE
                     FDDAKKSCRRRLAGHNERRRRSNASEAMARGSAHPHGMPVLGHGFPPYGLPTSSAGAL
                     SLLSSARATGPWLMPTPDISARSSAALDELIAENRAALLSWQFFSDRQPPPAGRPTGR
                     SPGSETAGGWHAHLQARPPPPGAGGQHENQSGHVTLDLMQATTAAGGSGAPFRPVPAR
                     PPKEGGDAGCTSDAWTPSPMEGARVV"
BASE COUNT          236 a          511 c          542 g          231 t
ORIGIN      
        1 gggttacaac cgccgccgca gcctttttcc caatcggcgc tagttttcga tccgccgccg
       61 tcggccggag cgaagccaag cccgcgcgac caggtggctg ctgctgtgta acgacgctag
      121 ctagcttagc tgcggtacgt ttacacatag gtccgtccgt gtgcggctgc caccatggaa
      181 ggaaacggct gcggcggaag cggggcgaca ccacgtggtg tcgttgggat gcactgggct
      241 cccgtcgtca cctcgccgcc tagcccgcag ccgccgttcc tcccgccggc gccatgcagg
      301 cccgacgtcc agatgcaaca gcaaggcggg ctgacctgcc tcaagctcgg gaagcggccg
      361 tgcttctggg gtggcgacgg cgccggccag gtggcgcagg ggagcggcgg cggcggaggc
      421 ggaggcggtg gtggttccgc ggatcagggg aagaggaagg agaaggcggc gacggcggtg
      481 ccggtggtgc cccgttgcca ggtggagggg tgcgacatta cgctccaggg agtcaaggag
      541 taccaccggc ggcacaaggt gtgcgaggtg cacgccaagg ccccgagggt cgtcgtgcac
      601 ggcaccgagc agcgcttctg ccagcaatgc agccggttcc acgtgctcgc ggagtttgac
      661 gacgccaaga agagctgccg gcggcggctg gccgggcaca acgagaggcg gcggaggagc
      721 aacgccagcg aggccatggc caggggctct gcgcacccac acggtatgcc ggtgctggga
      781 cacggtttcc cgccgtacgg cctgccgacg tcgtcggctg gtgctctctc tcttctgtca
      841 tcggctagag ccaccggccc atggctgatg ccgacgcccg acatctccgc ccgctcaagc
      901 gcggcgctcg acgagctcat cgccgagaac cgcgcggccc tcctctcgtg gcaattcttc
      961 tccgaccgac agccgccacc agctggccgt ccaacgggcc gcagcccggg ctccgaaacg
     1021 gccggtggct ggcacgcgca cctgcaggcg cggccgccac cgcccggcgc cggagggcag
     1081 cacgagaatc agtcggggca cgtgacgctc gacctcatgc aggccaccac cgcggcagga
     1141 ggcagcggcg cgccgttccg gcccgtgcca gcgaggcccc ccaaggaggg cggcgacgcc
     1201 ggctgcacct ccgacgcgtg gacgccgtcg cccatggagg gcgcccgcgt ggtctgagtg
     1261 tccgacctgc cagccgcgac gtcgccgcgc gtgcaccacg gtccctagct cccgtgtcag
     1321 ctgggcgtgg gaagcgatcg atcagtggtg ggcgcgtgcg cacggctgga gctctgtccc
     1381 gacgccgcgc gcagccgtgc aatcaacttg agttcgttgg acaatagtgt ctcgtctcgt
     1441 agcaatctat cccgatgtag cagtactggt gcagtggtgg tggtggtgcc actagctagc
     1501 aatgttctat tttttcgctc
//