LOCUS AK068726 2219 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013160O09, full insert
sequence.
ACCESSION AK068726
VERSION AK068726.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2219)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2219
/clone="J013160O09"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 54..1862
/db_xref="Osa1:LOC_Os03g11120"
/db_xref="RAP-DB:Os03g0209600"
/note="(RAP Annotation release2) Similar to MEtRS (EC
6.1.1.10)"
/note="(Rice Genome Annotation Project) methionyl-tRNA
synthetase, putative, expressed"
/note="mapping to R03-TIGRv4S1-000392F (Chr.3: short
arm=5700218, long arm=5707696, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG91051.1"
/translation="MAAGRAFLRAAPSSLAAGAGRFAFACPTALPLTAAAAAATGPHR
RGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLDKRVV
FITGTDEHGEKIATSAEACGRNPKDHCDTISNSYKMLWADLDIEYDKFIRTTDRKHEA
VVNDFYSRVLDSGDIYRADYEGLYCVSCEEYKDEKELGENKCCPVHLKPCVPRKEDNY
FFALSKYQHQLEDLLTKNPNFVRPSHRLNEVQGWVKSGLRDFSISRASVEWGIPVPND
TKQTIYVWFDALLGYISALLDDGEKASLQQAVERGWPASLHLIGKDILRFHAVYWPAM
LMSAGISVPDAVFGHGFLTKDGMKMGKSLGNTLEPKDLVNRFGVDSVRYFFLREVEFG
NDGDYSEERFINIVNAHLANTIGNLLNRTLGLLKKNCKSTLAFDSIAAADGISLKDNV
ENLVDKAKDQFENLLLSSACETLMEIGNLGNLYIDEQAPWSCFKQGGESAEKAAKDLV
IILETMRIIAIALSPITPSLSLRIYTQLGFTEDQFRTLRWEDTKWGGLKAGQVMMEPK
PVFARIETETDEKDQSSSKATKGGKKKARSQGLVEA"
BASE COUNT 618 a 491 c 549 g 561 t
ORIGIN
1 gtaacgcgac ccaaccaaaa acccctcctc ctctcgccgc ggcctccatc gccatggccg
61 ccgggcgggc cttcctccgc gccgccccct cctcgctggc cgccggcgcc ggacgcttcg
121 ccttcgcgtg cccgacggcc cttcccctca ctgccgccgc cgcggcggcg accgggccac
181 accgtcgcgg ccgcggccga tgctactgct ccgcctccga tgcgccgccg ccgccgccat
241 acgtgctcac cacgccgctc tactacgtca acgccccgcc gcacatgggg agcgcctaca
301 ccaccattgc cgccgacgcc atcgcccgct tccagaggtt gctggataag agggtcgtat
361 ttattaccgg aacagatgag catggcgaga aaattgccac ttcagcagag gcttgtggta
421 gaaacccaaa ggatcattgt gatacaattt ccaattcata taagatgctt tgggctgatc
481 tagacataga gtatgacaag tttatccgca caactgatcg taagcatgag gcagttgtca
541 atgacttcta ttccagagtg ctagatagtg gtgacatata tagagcagat tatgaaggac
601 tttactgtgt gagctgtgag gagtacaagg acgaaaaaga gcttggggaa aacaaatgtt
661 gcccagtgca tctaaagcct tgtgtaccaa gaaaggaaga caactatttc tttgccttgt
721 caaaatacca gcatcaactg gaagatctac tgacaaaaaa tcctaatttt gtacggccat
781 cacatcgctt gaatgaggtc caaggatggg ttaaaagtgg attaagggac ttctctattt
841 cccgtgcatc tgtagagtgg ggtattccgg tgccaaatga caccaaacag acaatatacg
901 tgtggtttga tgcattatta gggtacattt cagcattact agatgatggg gagaaggcaa
961 gtttacaaca agcagttgaa cgtggttggc ctgcctccct acacttgata ggaaaggaca
1021 tattgcggtt tcatgcagta tattggccag caatgttaat gtcagcagga ataagtgttc
1081 ctgatgcagt ttttggtcat ggatttttga caaaggatgg catgaagatg ggaaaatcat
1141 taggcaacac acttgaacca aaggatctgg taaacagatt tggagtagac tctgttaggt
1201 acttcttctt gcgggaagtg gaatttggca atgacgggga ctattcagag gaacgcttta
1261 tcaatatagt caatgcgcat cttgccaaca ccattggaaa cctcctcaat cgcacacttg
1321 ggctgctaaa gaagaattgt aaatccacat tagcttttga ctcgattgct gccgcagatg
1381 gaatttcatt aaaggataat gttgaaaact tggtggacaa ggcaaaggat cagtttgaaa
1441 atcttttgct gtcatcagca tgtgaaactc ttatggagat tggtaactta ggaaacttgt
1501 acattgatga gcaagcacca tggtcttgtt tcaagcaagg gggtgagagt gctgaaaagg
1561 cagcgaagga tcttgttatt attttggaga ctatgagaat aattgcaatt gcactatcac
1621 cgatcacccc aagcctttct ttgaggattt atacacagct tggtttcaca gaagaccaat
1681 ttagaacatt gagatgggag gataccaaat ggggaggtct aaaggcaggt caggtaatga
1741 tggagccaaa gccagttttt gcaaggatag aaacagagac ggacgagaaa gatcaatcaa
1801 gttcgaaggc aacaaaaggc gggaagaaga aggcaagaag tcaaggactt gtggaagcat
1861 gagtcaagtt tgtgatggtg tacatagcat aaaactacct gcgaccttgt cgcttggtga
1921 caaagaaggc ctgaagcatt ttcttggggc gaattggttt ctgcaatttt gttctaacac
1981 tggctttcca attccaagta gtacatactg atactgatag ctgagttaat tccccactcc
2041 cgcaatgttt tattccagtg aacgcagcta ttgcttctgt ttgttattgg aataatggag
2101 catcctgagc tcatccatct ttatcgaatt tagattaaat cttttgtacg attcctaaca
2161 tgacatttat ggaattggga gcaccctatt taagagggaa aagatgcatt tgatggagc
//