LOCUS AK068706 3322 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013158O16, full insert
sequence.
ACCESSION AK068706
VERSION AK068706.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3322)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3322
/clone="J013158O16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3322
/db_xref="Osa1:LOC_Os02g02540"
/db_xref="RAP-DB:Os02g0117500"
/note="(RAP Annotation release2) Similar to Glutamate
receptor 3.3 precursor (Ligand-gated ion channel 3.3)"
/note="(Rice Genome Annotation Project) glutamate
receptor 3.3 precursor, putative, expressed"
/note="mapping to R02-TIGRv4S1-000061F (Chr.2: short
arm=918796, long arm=923968, direction=forward) for TIGR
Pseudomol ver4"
BASE COUNT 886 a 682 c 756 g 998 t
ORIGIN
1 gaccagaaaa tgtgctgaaa atgagcttcg cgaaagctca cgcggtcttc ttcagagaga
61 ggggtcccta ctccgtgtcg agctgagcag cagcagcagc agcagcccgc gagcccaaag
121 atttcctctt tcgtggggga gacacgccaa atccaatccg agttctccaa ctcatcaata
181 atctgcaaga tgtgaataag tctcaagtag actttgcacc atttgagaca caatgaagat
241 aggtctgctc atgttgcttg ttctcttcct ggtcatgtcc cctgatggga tccgcaggag
301 cttagccgcg aggccttcta ttgtgaatat tggggccatt cttcgattta actccaccat
361 tggaggtgtt tcgatgattg ctatccaggc agccttggag gatattaatt ctgattcaac
421 aattctaaat ggaacaactt taaaagttga catgagggat acaaattgtg atgatggttt
481 ccttgggatg gttgaagctt tgcagttcat ggagactgat gtgattgcaa ttattggccc
541 acagtgctca acaattgcac atatcgtttc atatgtagca aatgagctcc gagtccctct
601 tatgtccttt gcatctgatg caactttgtc atcaattcag ttcccattct ttgttcgaac
661 tgctcccagt gatctctatc aaatggatgc tgtacctgca atagttgact actaccgttg
721 gaagatagtg actgctatat atattgatga tgattatggc cgaaatggaa tagccacatt
781 ggatgatgca cttactcaaa ggcgctgcaa aatctcctac aagattgcat ttcctgcaaa
841 tgctagaaag agcgacctca taaatttatt ggtcagcgtt agttatatgg agtctcgtgt
901 tatcatcctc catactggtg ctggacctgg actcaagatt ttctctctgg cgaaccaact
961 aagcatgatg ggcaatggct atgtatggat tgcaactgat tggctttctg cttatctcga
1021 tgctaattca tcggttcctg atgagactat gtatggcatg caaggagttc tcactttacg
1081 cccacacatt cctgaatcaa agatgaagag taatttgatc tccaagtgga gcaggttaag
1141 caagaagtac agttatagtt atctccgcac aagttcatat gctttttatg tttatgatag
1201 tgtatgggca gtagctcggg ctttggatgc tttctttgat gatggtggga agatttcctt
1261 ttcaaatgat tcaaggctgc gtgatgaaac tggaggtact cttcaccttg aagcaatgag
1321 tatttttgat atgggaaata acttgttgga gaagattaga aaggcaaact tcactggggt
1381 gtctgggcaa gtgcaatttg atgctactgg tgacctcatt catcctgctt atgatgtcat
1441 aaatataatt ggaaatggca tgcggacagt tggctattgg tcaaattatt ctagcttgct
1501 gtcgactgtc cttccggagg ttctctattc agagcctcct aacaattctc tagctaatca
1561 acatctatat gatgttattt ggcctgggca gactgcacaa acgcctcgag gctgggtttt
1621 tccttctaat gctaaggagt tgaaaattgg tgtccccaac agatttagct tcagagaatt
1681 tgtcacaaaa gataatgtta ctggatcaat gaagggctat tgcattgatg tctttactca
1741 ggcattggct ttgcttcctt atcctgttac atacaagttt ataccatttg ggggtggtaa
1801 tgaaaatcca cattatgaca aactcgtaca aatggttgag gataacgagt ttgacgcagc
1861 aataggggat attgcaatta caatgagcag gactgtaact actgatttca cccagccctt
1921 cattgaatct ggcttggtta tcttggctcc agttaaaaaa catattgtta attcctgggc
1981 attcttgcag ccattcactc ttcagatgtg gtgtgttact ggattattct ttcttgttgt
2041 gggtgcagtt gtttgggttc ttggacatcg aataaatgac gaattccgtg gctcaccgcg
2101 agaacaaata attactattt tctggttcag cttttcaacc ttgttttttg cacacagaga
2161 aaataccatg agtaccttag gacgtggtgt cttgatcata tggctatttg ttgttttaat
2221 cattcaatcc agctatactg caagtcttac ttccatcctg actgttcaac aactcgatac
2281 ttctataaga ggaattgatg acctgaaaaa tagtgatggt cctattggtt tccaagttgg
2341 ttcttttgca gaagaataca tggtcaggga gctgaacatc tcacggtcga ggctgagagc
2401 tcttggttct ccagaagaat acgctgaagc gcttaagcat ggccctaaga gaggaggtgt
2461 catggccatt gtagatgagc gcccctacgt tgaactgttt ttgtcaactt attgcaagat
2521 tgcagttgct ggttcggatt tcaccagcag aggatggggc tttgcatttc caagagactc
2581 ccctttgcaa attgacctat cgactgcgat cctgtcactg tcggagaacg gggaactgca
2641 gaggatccat gacaaatggc tcaagactag cgagtgctca gccgacaaca ccgagtttgt
2701 cgactcggat cagctccgcc ttgagagctt ctggggcctg ttcctcattt gtggtatcgc
2761 atgtgtcatc gcgctgctca tctacttttt caccaccgta cgcaaattcc tcaggcatga
2821 acctccagaa gatccaacac ctcgtccagg cggatcaaca actcttccag acgaacgaac
2881 acccccaaag aacggacaag agaaatgcaa ctgcagaaat ttcatctcat ttcttgatca
2941 caaggagcca ccaaagaaga agcggtcctt gagtttgacg ccgacaacgc cattgagcaa
3001 ctttactgcc cttgaaatag aaggacctgt gaggacagtc aggaatggta gtgtcgttga
3061 catatagaac tagtgtgtgt aaaaagctga gatgttatat attttggatc tgagatatgc
3121 catctttcgg tcaatctcct caattttagt tgagagaaaa tataatcaga ggctgcataa
3181 gatgctatct gtagatttca agcaaatccg gtgatgggaa aaattcattt gaggccagtt
3241 tggcaactga aaaactgtat agaaagttat tcttgtcctt gatggtattt tgaatggagg
3301 aaatatatac gtctgtttga tt
//