LOCUS AK068651 2197 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013159A19, full insert
sequence.
ACCESSION AK068651
VERSION AK068651.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2197)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2197
/clone="J013159A19"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2197
/db_xref="Osa1:LOC_Os03g22400"
/db_xref="RAP-DB:Os03g0344300"
/note="(RAP Annotation release2) Similar to SUMO protease"
/note="(Rice Genome Annotation Project) sentrin-specific
protease 2, putative, expressed"
/note="mapping to R03-TIGRv4S1-000736R (Chr.3: short
arm=12802439, long arm=12807050, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 545 a 493 c 563 g 596 t
ORIGIN
1 gactgctcaa acccccgccg cgccaaccta gggcatgctc ccaaccccca tggccctagc
61 cctagcccta gccctatccc cctcctcctc ctcgccatga ccgccctcgc ctcccccttc
121 ctcctccccc accgccgccg gaagcgcccc ctcgacgatt cccacttcca cggcccgcag
181 cgccaccgcc gccgccgcct ctgcctctgc ccggcggcct tcccctcccc gccgatcccg
241 cccgaggcgg cgtcgtcccc cgcgttcgac atggggggct tcctctcctt cctccggggt
301 aaacctaggc acgacgatgc cggcctcggg gtgtacaggg gctgggtcga cgtccggtcg
361 cgggatctct cggtggccac cgccatggaa gacgacgacg cggggtttgg cccccggttg
421 gtggtgaggc ggagggtcgg ggacccgagg aaggccgccc tggaggccgc ggcgccgcgt
481 ccgcgggtga agagggagcc gtactacaag gaggcgctcg agaggatgag gagccacgac
541 aagaggctgg gcgagctcgc ttcactggtg aatctagaag aggagaaact cgccgagctg
601 cggaaggcgg ctgagccacc caaggaggac ctgtctgaac tctttacacc tctaactgct
661 gaagaggaaa atgaagttca taattgtttg tttggtaggg gttcaagtac tgaaatccta
721 gcactgcatg agccctccaa cattgaagtt agcagagaga agttccggtg cttgagactg
781 actgcctggt taaatgatga ggtcattaat ttgtaccttg aattattgaa ggagagagag
841 gcaagagaac caaaaaggtt tttgaaatgc catttcttta atacattttt ttataagaag
901 gatgatgttt ggagaaatgc cacccaagtg ttagcttcgc aaaataccat tacttcttct
961 ctttgggggg cagtattgtg ttggcctgtt tggttaggga tgggaaattc taggaagttc
1021 ttcatttgcc ttcatccact catttgatat ccttttatta tgaattttac catttcattt
1081 tcatttgtga atgctgaatt gctgatcacc aagtaaatgc taatcttcat tgactccctg
1141 aattgttggt cgtttggttc agcttgcttg cggaaaaaat ggctatgact acaaatctgt
1201 taaaagatgg actacccgca ggaggttggg ttatgagctt attgagtgtg ataaaatctt
1261 tgtccctgta cataaagatg tccattggtg cttagcagtt ataaacatga aagaaaggac
1321 attccaatac cttgattctc ttggttgtgt ggatcatcat gtaccaagag tgctggctag
1381 atatattgca gaggaagtga aggacaagag taataaagag atcgacacaa acacttggca
1441 cgaagagtta gttgatgata ttcctttgca gcaaaatggg tgggactgtg gtatgtttat
1501 gctcaagtac attgatttcc acagcagagg attgagcatg tcttttagtc aggaaaacat
1561 ggaatatttc agaaagagaa cagtgatgga aatcttaaga ttaagagctg actaatcaaa
1621 tatggatcct tttccttttg gtgaacagct gattaactta ggttgatatt cgtagactaa
1681 attgtcaatc gtgtatacat tgttggaagt tgccggcaaa gataggaaat atatttttcc
1741 agtgagaagc tggagttttg tcagtatgta aacctgtatg ttgataacac cagatttctg
1801 taaagttccg ttgtttttgg tgattcagtt ggcagaaaga acaagagggg gaagagaatc
1861 tttgcgctcg gttgaacaat ctgtatctga agagtttaac ttttaggagc ctagccgtag
1921 tgctactgat acttaccatt tgctgctcat ttgattgttc ttgtagtgct ttggtagctg
1981 gtggggattg gcatgctctg gtgcatgcca gaaaagagga aaggttgtac ccggcatcca
2041 caagttaaac aaatgcgtat aatggttctt catttgtaaa ccatgtgttt gtgttgtcaa
2101 atttactcgg gacatccgaa acgtaaaaca tcatgttttg tgatttgttt aatgaaacct
2161 tatgttctgg ggcaaaatgt tacttaaaac cccaggt
//