LOCUS AK068510 3163 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013152K18, full insert
sequence.
ACCESSION AK068510
VERSION AK068510.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3163)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3163
/clone="J013152K18"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3163
/db_xref="Osa1:LOC_Os03g52690"
/note="(Rice Genome Annotation Project) CBS domain
protein, putative, expressed"
/note="mapping to R03-TIGRv4S1-001402R (Chr.3: short
arm=30156982, long arm=30160936, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 789 a 627 c 708 g 1039 t
ORIGIN
1 gatcatacca agtgtcctcc ttcctcctca tcctccccaa ccactgcatc cgggtcggcg
61 tcctcctcct cctcctcctc ctcgcaggta aagcagcatc caagcatcct ttccaatcca
121 tgctcagagt tggaagtaga gctgctgctg atgatggtgt gtggatcggt gctggttggt
181 ttctcgttct tgcttgagtg tgagatgtga tgttgatgtg cgtgtgtgtg gagtctggac
241 tggaaggttt cttgagttca gagtgcagat cagagaatcg tacttttgct ttttacagtg
301 tgttcttggt ttgcccacac gatctgttca tcttttgttt cttttgtttt gcctttcatg
361 aacaaacgac cacagctctg cttgcctgct actgtccttc tcagtttggc aaatgaaagg
421 atattttttt tagggaaaga aagcgaaaat tactagtgct agaaagcagt ggcaagtgag
481 aataacactt ctgcttgatt gattaggtta ggagtttata gatagttctt ccctcttggt
541 actgtcagtc tgtcactggt gtgtaagtag agtgacagtg ttgatgttct tccttgagat
601 aaacggcgat atccttttat cacttcctga gagagcacgg cacgctttac tcccttttat
661 tctggaaata ttgttctctt ccatgggtta cagtttgtgt ttcgatacag ctttgcttgc
721 catgattttt tttctggcca cttttttagt tagagaagct aaagaactta cttttggttt
781 cgggttaggc gtgccgtaga ttcatatgca attcatggtc cgcttgtttc ttttgattat
841 tgagcttgag tgattcggta acatcacaac agtacaccca catatcatgg acacatcaag
901 tgcgtgtagt ttatttagta tttagtgttt tgagtggaga cggcaatagc tggattctgt
961 atttggtggt gactccttat tggttgattg tgacctaaat aaatattatt gatttgctaa
1021 cgaatgctgg caaacctttg cccgtttttt cgccttgcac tttcatgaac taaatgattc
1081 ttggaatcta ggagtattaa ttggacagac tcttggattc tactctagat caataaggtt
1141 gactacattg ataggggatt ccctgtagaa tactgtgcat caaaatgaat accgattaat
1201 agtcaatatg tagacatgac catttcgctg gtcattcaac acattttggt gcgtacattg
1261 ctttgttcta gcagtatttt tgctgaccag tgtacaaaat ggtaggctag agctataatg
1321 ctttacatcc ttttcattgc atcagcgcag tggaaattaa cttccacttg acataatgct
1381 cccaggcccc atcaggattg gtgtggggtt gtttatttat gtggaatagt ttgagaacta
1441 tattgttttt taagtaattc cacttgtaca gactttcttg ttgctttctt accagtcctt
1501 tatactgaaa ctgattgtcc ggtcattcta gcagtcacct gcattacaac ggaaattgat
1561 ttgcaacaac tctgtttcgg acaagcaaaa aaaaaaatcc atgggaagag gagccctttt
1621 ttcgtttgaa ttattccaaa taccaactta tttacttgaa atccaaaaaa tcaggaagaa
1681 aaaagagaga gtagcaaaca gtttattaca cgaatgtcca gtcttttctt gctgcttttt
1741 ctggtgcttt tttattgatc aactgccatg atataattag taactagtct ctttgccttc
1801 aacaacagca tccggacttc cagagttcta gccaggcaca tgactttgtt ggagtcaagt
1861 aattggtcat accttaattt agattgatga actttcggtt gcttttggtt cttctctgtg
1921 ttgtatttga gataattttg cagtattgtt caaattttaa actcttaagt catccaagac
1981 atctttattc tcacgagttc tttgctatct gtagttctat atactctttt atcattagcc
2041 aaaaaagaag tgaaataata agaagttata agtcagatat tttctttgtt caaaatggag
2101 taatcatgtc ttttgatatg tttgatctga cacagaatgc aacgggcaat tcaagctatc
2161 gggtcacatg gcagtctcct caagtctgct gttctgcgac acatcagtgc tccaaaacca
2221 tctattttac ctgctgtata ttcacgctcc atgtcagttt catctgctca aatagaggag
2281 agtggatttg agactgccac tgtggcagat attttgaagt ctaaggggaa gagtgctgat
2341 ggatcttggc tctggtgcac tactgatgac tctgtctatg atgctgtcaa atctatgacg
2401 caacacaatg ttggagctct ggtggttgtt aaacctggac aggataaatc aattgctggt
2461 attgttactg agagattacc tcaggaaaat catagtgcag ggacgatctt ccaagtcaac
2521 taaagttgga gacatcatga ctgaagagaa ccagctgatc acggtgaagc ctgataccag
2581 agtcctgcaa gcaatgcagc tgatgacaga gaagcgcatc aggcacatcc cggtgatcga
2641 cggcacgggc atggttggga tggtctccat tggagacatt gtccgcgccg tggtcagcga
2701 gcaccgggaa gagctgaacc ggctcaacgc ctacatccag ggtggctact aggacgccga
2761 cgtcgacgtt ggtcactcgc tcctgccatt gaggctgtgc ctgtctgaaa aagactccct
2821 cttccaaata acgctcgctc gggatgatga cgaaataggc cgcgattttc ctggagaaat
2881 tgttgccgaa tgtttctgct tgttcgcgtg tattatatca atctgatggt ggaaacgaac
2941 acccaaataa aatgaaccgt gtacaccgtc ttgtgcagca gcctgctgtt tgtgaattgt
3001 ggcaggttgt tgttgagacg agtcttgatg tttaattaga tggatttgcc gctgtagttt
3061 gggaatcctg ggcgttttca caagtcagac gctgaacata agcaaagcct ctggccatgt
3121 ttggggattg tttgtggagt ttttaacggc tgatgcttct ttt
//