LOCUS AK068473 3184 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013157F01, full insert
sequence.
ACCESSION AK068473
VERSION AK068473.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3184)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3184
/clone="J013157F01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3184
/db_xref="Osa1:LOC_Os02g57270"
/note="(Rice Genome Annotation Project) initiator binding
protein, putative, expressed"
/note="mapping to R02-TIGRv4S1-001589R (Chr.2: short
arm=35080220, long arm=35084784, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 858 a 715 c 765 g 846 t
ORIGIN
1 gacggggttt ttctcctcca atcctttccc ctctccctct cctcctcctc ctcctccctg
61 cgccttccac ttgcagcgat tcctcctccc cgcccgctct tctcgaacct tctggaacct
121 tcccccatcc cccacaagaa gcagcagatg ggcatcgtcg tcgtcgtcgt caaccaatcc
181 taggcgacga gcgctgcggc ggcgcgcgcc atctgctccc ctccgccgtg ctccggtgct
241 ccccgatctg cgcctcccgc tccggttggt cggctgtcgg aacacgcagc tgcaaaaccc
301 tagccgagct gcggcgatct caacgctggc ggcgaggccc tcctcttcgt cggcgtcgac
361 ggaaaaatat ggcgcatgtt ttatttactt ccccttgctg tcactgaaca catttcctaa
421 agtcaaggac aagacatggt gttgcagaag aggttggact atggatccca tggccatcgt
481 gctcccatta agccacgtgt cgcaacattg gcgccggtta aacgctccac aagaataagg
541 aaaaagcaga tgtatgcact tgatttgctt gcgacagctg cagaaaaatt gttggctgat
601 caagacaatt tatctagtgg acctaacata aatgaaacac cagaaggtta tgttacaagc
661 atgaaaccag ttaaagcaga acagtttgat gaagcgtttc cgttgagaag cgtggctgtg
721 aaaaaagatg actgcaaagg ttgtacagta ggctgtgcag gcatctgtgg ctttctcaga
781 caagctaata tgtgcttggc tgaaaactcg tcgactcaaa atctagctga ttcagtacta
841 gagtcactaa cagcaaagcc tgatgtgttg gctaaggact catttgttag cagtaaaaaa
901 tcatgtcgat tgggttttgg tcttggcaca attccggagt atggatctgt tggagtatgc
961 caaccttggt ccacaagatc agcagaggtt aaacaagtgc atcgggcgag accaacagca
1021 atcagaagtc aagaagatag tgatgctgca gctctatgtg ctttggtcga gaccatggat
1081 ttggacacca aacctcttgc tgaggctagc tctggtagta actcaggagt gcacatctgc
1141 ggccctgaca gggggcataa ctcccatccc tcgtgtttgg ctaaagtgca gcatgctgca
1201 gacagagatg atgacgaaaa ttcttctggg tgtgtacatc caagcacctc aggaaataac
1261 cgtggttata ttccacatta tataggtgac cgcaggataa ggagattgtt tgcctccagg
1321 ttaaggaagg cagctcgcaa caggatatgt ggagagatgt cttgtaaagg taacaagctg
1381 agtttgtgtg aaaagaagat gcccactacg cgccgaagag tgcaacaaac aactttgaag
1441 aggaaaagac ttgctcaact ttactccgaa aaatcatctg atgaaggtat cctaactgaa
1501 agtatttttt gataatggaa gttttattaa aaactcagat cctaactgaa agtatgtatt
1561 gtgttgtccg tttcccttat tgtatctaaa ggtcacaaat tatttagatt gctccaggat
1621 gtaacattgc acatagttgg tacgacttaa tccttcttac acacagcatt ggatattctg
1681 aacccctgct ttgatacact tcctaaaaat acacgggcat gccatttctg ccagtggaac
1741 tccattttgt atgggtgatc caaatccgca tgtgcatctg agggctatga tggcgtcctg
1801 gatgtttatt ttagttttgg ggttgactta aaagaatcat tgcttaattt ataaacacaa
1861 tgacttactt ttttctctct tttcagtcaa gttaaccatc aaatctttca acatccctga
1921 actactaatt gagatccctg aaaatgcaac agttggttca ttgaagaaaa ctgtgtcaga
1981 tgctgttact actataattg aacgcggtct ccgtgtcggt atacttcttc aaggaaaaaa
2041 tattcaaaat gacaacaaga cgcttcgtca ggctgggatt tgccgtggta aaaaactaaa
2101 tgacataggc tttactctgg aatgtgaagc cgggcaagat tctcaccctg gtgtaatagt
2161 gccagaagaa atggattttg ttggtgcatc tgttgtggac aagtctgcta cgtaggttac
2221 aagaaagcat cttctccttg cattattaga caggaggctt ggatttacat gtgatgatta
2281 gaaaacattg tcaggatgca tctgatagtt tatgtcaacg ttgttgtttt gcagaagttt
2341 cggaaactac acgaccatag atttttgctg tatgtggtca tctaagggtt ttaatattcc
2401 atttccaggg tgaaatgcga agaacctgct gagaaccagc agcttatgca agattttcca
2461 ggctgcagct tgagtgatcc tggttctgtt gattatcccg tggaatggag cacacaagaa
2521 acatcagcaa gctcccaagc catcgtccct tttgcagatc caaactcact ggcgctggcc
2581 aatgtgccgc tttctaggtc aaagcgacca gattttgggc aaagacggat aaggaggcct
2641 ttcactgttg ctgaagtgga gttgctggtg gaagccgtcg agcaccttgg aacaggaagg
2701 tggagggacg tcaaattccg cgcatttgaa aatgttcatc ataggaccta tgttgatctg
2761 aaggacaagt ggaagaccct ggtgcacacg gcgagcatag cgccgcagca aagaagggga
2821 gctccagttc cacaggaact cctggaccgt gtgctcgccg cacaggccta ctggtcggag
2881 cagcaggcaa agctccatgg cgatccccct gttcctgaaa tctgccctac ctgatcctga
2941 tgatgattga tggagaaggc aagaatggcc ctcgtgtaca aatcggtgta aaaattgttc
3001 agaagggatt ggttggttga cgtttgattg aaatttgtcg acagttgaaa actcacaact
3061 tggtccttcc tactgttggt tcgttaacag gaggaggaag aagaagaaga agaagaagaa
3121 gaagcttatt tgtaaatttc agcagagttt actgtctttg caaaaatgca agtcgttttg
3181 gacg
//