LOCUS AK068340 1753 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013151F09, full insert
sequence.
ACCESSION AK068340
VERSION AK068340.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1753)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1753
/clone="J013151F09"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1753
/db_xref="Osa1:LOC_Os04g37470"
/db_xref="Osa1:LOC_Os04g37480"
/db_xref="Osa1:LOC_Os04g37490"
/db_xref="Osa1:LOC_Os04g37500"
/db_xref="Osa1:LOC_Os04g37520"
/db_xref="Osa1:LOC_Os04g37540"
/db_xref="Osa1:LOC_Os04g37550"
/db_xref="Osa1:LOC_Os04g37560"
/note="(Rice Genome Annotation Project) NAD(P)H-dependent
oxidoreductase, putative, expressed"
/note="(Rice Genome Annotation Project) aspartic
proteinase nepenthesin-2 precursor, putative, expressed"
/note="(Rice Genome Annotation Project) expressed protein"
/note="(Rice Genome Annotation Project) glutamate
decarboxylase, putative, expressed"
/note="(Rice Genome Annotation Project) hypothetical
protein"
/note="mapping to R04-TIGRv4S1-000536F (Chr.4: short
arm=22111116, long arm=22113268, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 364 a 520 c 577 g 292 t
ORIGIN
1 ggtggccaaa acgagacgtg cagagagaga caccaatctc gtacgtagca tatctacatc
61 gcaggaacac ccaaatcact cgtgcgtagg tatggttctg acgcacgtcg aggcggtgga
121 ggagggcagc gaggcggcgg ccgccgtgtt cgcgtcgagg tacgtgcagg acccggtgcc
181 gaggtacgag ctcggcgaga ggtcgatatc caaggacgcc gcgtaccaga tcgtccacga
241 cgagctcctc ctggacagca gcccgcgcct gaacctggcg tccttcgtca ccacctggat
301 ggagcccgag tgcgacaggc tcatcctcga ggccatcaac aagaactacg ccgacatgga
361 cgagtacccc gtcaccaccg agctccagaa ccggtgcgtg aacatcatag cgaggctgtt
421 caatgcgccg gtgggcgacg gcgagaaggc ggtcggggtg ggcacggtgg ggtcgtcgga
481 ggccataatg ctggccgggc tggcgttcaa gcggcggtgg cagaaccggc ggaaggcggc
541 ggggaagccc cacgacaagc ccaacatcgt gacgggggcc aacgtgcagg tgtgctggga
601 gaagttcgcg cgctacttcg aggtggagct caaggaggtg aagctgaccg aaggctgcta
661 cgtgatggac cccgtcaagg ccgtggacat ggtcgacgag aacaccatct gcgtcgccgc
721 catcctcggc tccaccctca ccggcgagtt cgaggacgtc aggcgcctca acgacctcct
781 cgccgccaag aacaagcgga cgggttggga cacgccgatc cacgtcgacg cggcgagcgg
841 cgggttcatc gcgccgttca tctacccgga gctggagtgg gacttccggc tgtcgctggt
901 gaagagcatc aacgtcagcg gccacaagta cgggctcgtc tacgccggcg tcgggtgggt
961 catctggcgc aacaaggagg acctccccga ggagctcatc ttccacatca actacctcgg
1021 cgccgaccag ccaaccttca cgctcaactt ctccaaaggg tccagtcaga ttattgcgca
1081 atattaccag tttcttcgac tcggatttga ggggtacaag agcgtgatga agaactgcat
1141 ggagagcgcg aggacgctcc gggagggcct ggagaagacg gggcggttca ccatcatctc
1201 caaggaggag ggcgtgccgc tggtggcctt cacgttcaag gacggcgccg gcgcgcaggc
1261 cttcaggctg tcgtcgggcc tgcgccggta cgggtggatc gtgccggcgt acacgatgcc
1321 ggcggcgctg gagcacatga cggtgctccg cgtcgtcgtc cgggaagact tcggccggcc
1381 gctcgccgag cggttcctgt cccacgtcag gatggccctg gacgagatgg acctcgccgc
1441 cagggccccc gtgcccaggg tgcagctcac catcgagctc ggccccgccc ggaccgccgg
1501 cgaggaggcc tcgatcaggg tggtcaagag cgaggccgtg cccgtgcgca agagcgtccc
1561 gctcgtcgcc ggcaaaacca agggcgtttg ctagaccggg ttaaattttt ttttaaaata
1621 ctggtgggaa cacgaccaaa ataaaatttc aaaatgggag cgtactaaac cttctttatg
1681 ctacagtaac tatgtagtac aagcatgccg aaagttaatc atcgtgtgta atcgtattag
1741 agtttgcaac agc
//