LOCUS AK068266 1999 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013149A10, full insert
sequence.
ACCESSION AK068266
VERSION AK068266.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1999)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1999
/clone="J013149A10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 67..594
/db_xref="Osa1:LOC_Os12g19470"
/db_xref="RAP-DB:Os12g0292400"
/note="(RAP Annotation release2) Similar to Petunia
ribulose 1,5-bisphosphate carboxylase small subunit mRNA
(clone pSSU 51), partial cds. (Fragment)"
/note="(Rice Genome Annotation Project) ribulose
bisphosphate carboxylase small chain C, chloroplast
precursor, putative, expressed"
/note="mapping to R12-TIGRv4S1-000399F (Chr.12: short
arm=11317744, long arm=11319841, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG90832.1"
/translation="MAPSVMASSATSVAPFQGLKSTAGLPVNRRSSSSSFGNVSNGGR
IRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENH
RSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLIS
FIAYKPPGCEESGGN"
BASE COUNT 530 a 424 c 471 g 574 t
ORIGIN
1 ttggtactca agccggaggc agcacactgc aacttaagtt tttctatagc tcctagcaag
61 ctagcaatgg ctccctcggt gatggcttcg tcggccacct ccgtggctcc cttccagggg
121 ctcaagtcca ctgcgggcct cccggtgaac cgccgctcca gcagctcgag ctttggcaac
181 gtcagcaatg gcggaaggat cagatgcatg caggtgtggc cgattgaggg cattaagaag
241 ttcgagactc tgtcgtactt gccgccattg acagtggagg accttttgaa gcagatcgag
301 tacctgctcc gatctaagtg ggtgccttgc ttggagttca gcaaggtcgg attcgtctac
361 cgtgagaatc acagatcacc cggatactat gacggtaggt actggaccat gtggaaactg
421 cccatgtttg gatgcaccga tgccacccaa gtgctcaagg agctcgagga ggcaaagaag
481 gcataccctg atgccttcgt tcgcatcatt ggctttgaca acgttaggca ggtgcagtta
541 atcagcttca tcgcgtataa gccaccgggt tgcgaggagt caggcggcaa ctaagcgctt
601 tcgttccttc gtgcatgttc tttctttttc tttttttttt ttgtgtgtcc gtgttaagct
661 gcacgtaatt gttctctcgc gctccgacct gccgttgttg caagagtact actacaacta
721 tcggtctatc gttcggtgac ggtgagacag ggcacgtgaa tgcaagatct ccggctatac
781 acacgtactc atgtaatatg atgcctagag catatctgaa tccgtcgaca atgaaatttt
841 ggttttgcaa aatgctggta tttgtttatc atcctggcac gtgatatttg cctagagcat
901 ctaaatcact tttacgaaat gtgcgcgtca acaaactgat acggcccaaa tgccagaaat
961 taccagcata tatagccata tcaacttttg attcgtatat atgaaggttg atttagttag
1021 agaaattcgg ttgtgagaga aggaggctag caaagattcg gttgatcaag ctgtaccgcc
1081 aggccaggac gtgctgtgcg cgcggctgtg ccgcttgacc gcagaaccat acggaattga
1141 cggaccaatt gtgcatacgg acttagctaa aataattgtt gatttttggc aataagaaaa
1201 gcgagtagca cataaaatct aaagtggatg agtaaaggga caaaatttta tacatgttca
1261 ggccttctcg atgagaagta atactatact cctgttttgg ggattatatt tgtcagatgt
1321 tgtatcaatc tgacgatcga gttatggtta ttgttggcgg ctgttaaata tcgattttat
1381 gccatcaata cctgtataat ttatacagaa ataataaaac attcaacata gtggtaggct
1441 ttaattctaa catattccat aagtgttggt gtatatttgg atgcaggtaa taaaccaccg
1501 aattaggagg aaatctagac taagttgaag gaaattttca tccatacaag tgttgggctt
1561 tttaactcca ttttaacacc aaaatgcaag cccaaaaacc tgcgaaatgg ataaggcaga
1621 ctgagaagga ggcccaggcc aaaacttggg ccagttgggc caagccaggt ttcggccaaa
1681 tcctgatcat cgctgttgat ctcagggttt ggcatggacg ctcttgattt actcctgatg
1741 gcagttgcag ggcatttccg atcattcgca tgctctacaa ccatcatacc tacttattta
1801 aggagctctc atcctcactt catatcacac actccaatct tgagctgaat tataagaggc
1861 tctattgtat tttattgtat actagaatta gggaaagatt aaggtcgtag aagaaatcgg
1921 aggaattccg gagttatcgg tgatcctttt ctatttctta tactttgtta tttgctttaa
1981 tagaaatatc atttcaagt
//