LOCUS AK068250 4239 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013139B12, full insert
sequence.
ACCESSION AK068250
VERSION AK068250.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 4239)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..4239
/clone="J013139B12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..4239
/db_xref="Osa1:LOC_Os12g41900"
/db_xref="RAP-DB:Os12g0613200"
/note="(RAP Annotation release2) Similar to
Histone-lysine N-methyltransferase, H3 lysine-4 specific
SET1 (EC 2.1.1.43) (Set1/Ash2 histone methyltransferase
complex subunit SET1) (SET-domain-containing protein 1)"
/note="(Rice Genome Annotation Project) SET domain
containing protein, expressed"
/note="mapping to R12-TIGRv4S1-000804R (Chr.12: short
arm=25933084, long arm=25942442, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 1243 a 847 c 1073 g 1076 t
ORIGIN
1 ggagagagag agaggctcat cgccaatccg accaacgcaa ccactccaac ccaccggcgg
61 cggcggcggc ggcggtgggg cgcggcgacc cggcaccacg cgaccccggc gtcgccatgc
121 cgcactcgcg ctccgattcg gggtcgggtt cccgcggcgc tgacccttgc cgtgggagga
181 agcgcgggag gctgttgatg ctcgaggagg aggaggagga ggaggagtcg gggatggagg
241 ggtgctcggc gccagcatgc ggcgatgtgc ggggggattt cgttggatgg tgttcggacc
301 ggcatcaggt ggcttcctgc agcggcgacc agacgcaaag cgccagcatg tttgccgcga
361 tgcaggagaa cgcctgctcc atcgatagca aaggtgtggt gtgtccgcag tccgggctag
421 ggtattcagc tggccagaac gggacgcacg gtggtggcgg gtctatgctg catcagaatt
481 tggaaggctg catgtatatg aatcagcttg ggcagatgtg cggcccttat ccacctgaac
541 aactgtacga tggattatcc actggtttct tgcatcgaga ccttgctatt tatgccgttt
601 ttggtgggaa aatggccaac cctgtttcct taggttccct gaaacagttt ctttcacaat
661 ggagttctga ttctgtggtc gccacaagag acgaatcggt ggagagtaag aaaatggccc
721 ctgttaacaa attgattctt cctgataatc tttcaagtga agaatcatgt tggatgtttg
781 aggacgcaga aggccgcagg catgggccac attctcttgc tgaactttct tattggcatc
841 acagtagcta tctacatgac ctttcaatga tttaccatgt tgatagcaag tttggcccat
901 ttacacttgt atcactaatt gattggtgga gtggaggcac agagcattca gaatcttcag
961 ccaatgattc tgggtcactg aacgctttaa tggatgatgt agttgaagat atcagccatc
1021 agctgcatgc tggaattatg aaatcagccc gcaaagtttt tattgatgaa atatttagca
1081 gcgtacttcc agaaatgatt gcttgcagga agacagagaa gcaaatggct gcaaaacgta
1141 agagccaagc tgctaagact gacaatgtga gtaacaagaa tgctttggta cttaagggca
1201 agggtgatgg aacatctact cgtccaaaaa gcctaaactc gtataataat aaagtaccgg
1261 aagatccttc tgtggctgtt caatcaactg caatgcagta tgaatttgct gatatattat
1321 cggcagtttg ggaaacaatt tataacaaat ccatgaagag tatctgggat gaagtactgt
1381 atgatcctgt catggactac tgtgatgcat ggcttaaaag aaaaaatgag tcgaatcttc
1441 tctctacagt tgttcctgga gcctctgata accaaaagat gcaagacaca gatgaaatgt
1501 caccaaaggc aatttgtgat tcagatgctc ctgaaagtga catggatttc cctccaggat
1561 ttggaccaaa tcaggaatct gctgagcatt cccactctgc gtgtgttgag tatgttactg
1621 aaaaaacaga tgggaggtct ggatcaagta tcacgttgtt ttctggcccc ttaggacgag
1681 ttcaggtaat gctggcaaat gaactatatg tggcagcaaa ggaagctttg ttccagcatt
1741 ttgaggaggt catttcagag gagataacaa actgtttgtg cattggattt gaagatgata
1801 ttaatcaaga acgaattcgt acgcctgttc acgcaccaga accatccagt cctcctggaa
1861 tatctgtgca tgaaacgccc agtcctgctg aaatgcctcg agatggaatt tcggatatgg
1921 ctgaaatggc tcgagatgaa atttcagata tggctgtaga tacaataccc tgccctgctg
1981 atatggcggc atctggaaca tcaactgttc ctgaagtgac aacagacaaa ctgatcattc
2041 cttacgtgga acatcaatcg ccctctgcat ctcatgcaag tatatttgaa aagttggatg
2101 cacatgaaga agctgaattg gatgacagtt ttgatgaggt gcctcctgga acagaggctg
2161 gcttagcttc attggtgatt atggagaaaa acaaatacca gccctcaaaa tcagtagact
2221 cagtgcttga catttataga tatactagtt gggcattctt caggcaaata ctgcatgagg
2281 gtgtaatgaa agagtgggca tctctcttct caggtgctct cagcaattgt tttgactcat
2341 ggtatgccag gaaaaatatt gtggctaaaa ccatggatga tacattgaga cccaaagaat
2401 atacttacta caggaagagg aaactgagga aaaactgtga agcatcatca tcagaaaaac
2461 caatggatga gcagctctcc agacctcttc gtgatcttgt tgaatgcaag gttaatatga
2521 aaaatatcca tcgatcaagc aaggctggga tttcgcagag agtttctgtt gtggagaagc
2581 cctccaaaaa gcgtgccaaa ccttcacata atgataatat taatctgaat atccagcagg
2641 acttgaaact cctttccgaa aaggtgccaa agagaaacag gtcttcccat cctaccagta
2701 agcctcttgt tagtagcaaa gtgcctactg aggatagaac tacatcagca atgcctgcaa
2761 agaaaagaaa gcagaaaaac ttggccactg agtccaacct gaagacaaaa gcagtaattt
2821 tatctccaga atcacatggt tgtgaagcgc ctactgagaa aagaactaca gctataatgc
2881 ctgtaaacaa aagaaagaaa aacttgtctg gtgaatccaa actgaaggca aaaccgttaa
2941 caagtccaga atcgtatgtt tgtgaagctc ctattgacaa tagaactaca tctacaatgc
3001 ctgcgcagaa aagaaagcag aaaaacttgt ccaatgagtc caacctgaag aaaaaaccgt
3061 tggttttatg tcctgaatca tatggttgtg caagagcttc tgtgagtgga tgggaatggc
3121 gtgattgggc acgcaatgcc actccatcag aaagagctca agtgagaggc taccgagtga
3181 ggagtattct ctcagctcca gaaaataatg tattgaaaag ttcacaagtt aagggctcat
3241 ctgcaagaac aaaccgggtt aagctacgga atctgttagc agccgctgaa ggcactgacc
3301 tactaaaaat tatgcaatcg aagtcaagga agaagcggct acgttttcaa aggagtaaga
3361 tccatgaatg gggtctggtg gctcttgagt ctattgatgc agaagatttt gtaattgaat
3421 atgttggtga gctgatccgc cgacaggtct cggacatacg cgaggatcaa tacgagaaaa
3481 gtggaattgg aagcagttac cttttccgtt tggacgatga ctatgtggtt gatgctacta
3541 agcgtggtgg gttagcaaga ttcatcaacc attcttgtga tccaaattgc tatacaaaag
3601 taattactgt cgagggccag aagaagattg tcatttatgc aaagaggcgt atatatgctg
3661 gcgaggaact gacttataat tataaatttc cactggagga aaaaaagatt ccatgccatt
3721 gtggttccca gaggtgccgc ggatcaatga attaggaagt aaagtttata agtcaggagg
3781 taactgcaat tgggtgctac cccagtatgt atgtgtcatg cgtgcttgtc gattgtactg
3841 ggcagaagtt cactgcagaa atgttcttgg atttactgac aggatggtaa ttgtgtagca
3901 aggttagatg gactaattcg ggctatccag aggaaggtaa agcgctcaag tgtggactga
3961 tggacttgtt ggttgcctta gtgtgtctcc tgaacgaggt tcgtgtttac ttgctgacaa
4021 ggtacatgga tacatttaat ctatcatccg tggtgtatgt gtatgtattt cgtccagaaa
4081 aaaaaaagca tccgaatcat gtggtcaggt ggatacagac gtgcatgaat atctgatatc
4141 acaatcgtaa gtatgaattc aagtatttta ccagcttata tgtactttgt gcaggctaac
4201 aacagggcaa aagcaagcca ctaacaacca acccgttcc
//