LOCUS AK068232 3103 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013149D08, full insert
sequence.
ACCESSION AK068232
VERSION AK068232.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3103)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3103
/clone="J013149D08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 1908..2648
/db_xref="Osa1:LOC_Os08g01780"
/db_xref="RAP-DB:Os08g0109400"
/note="(RAP Annotation release2) AUX/IAA protein family
protein"
/note="(Rice Genome Annotation Project) OsIAA25 -
Auxin-responsive Aux/IAA gene family member, expressed"
/note="mapping to R08-TIGRv4S1-000026F (Chr.8: short
arm=461803, long arm=467165, direction=forward) for TIGR
Pseudomol ver4"
/protein_id="BAG90814.1"
/translation="MKSSSVAPRLKQERQDDCKFQEGDVNSLELRLGISSDNDQISGG
GAASPWLGVGVHPWSLAARQGKAALEQAHQRPNECAVQRENRAASSAQLVGWPPVRAF
RKNLSTPKPADADDLMNKVKLCSDEGHGSRCAAQERRSSSTMFVKVNLEGYAVGRKID
LKAHRSYDSLSQALQSMFHGFLSDGIATRDNELQQMEEGSKKRYVLVYEDNEGDRMLV
GDVPWELFIASVKRLYIAQDPRVHAKLR"
BASE COUNT 955 a 580 c 760 g 808 t
ORIGIN
1 ggggtctctg ggttctctgc tccctaacag aaaagaaaga aagaaagaag ctttcaccac
61 aaaaacccaa cccaccggtg gacaagagga attcgactat tccagatagg gcgacatgga
121 ctgcgagatg aggcgactct agtgccagtc actccggtgg cccatttttt cttccttttt
181 caggggaaaa aaaggaagga atttgggtag atcaatcaat ggagcagaga aattcgatgt
241 ttgtttgttt gtttgttcaa tagaggagag caattcttgg tcatgtatgc atcttgccca
301 cagtggaagg agtgagtgtg atttggaaga cgcaggtaga gggtgtgcct tccaggtgtt
361 cgatcatttg cctcaaagaa tccatatcct cttttgtgct actgtccaga tgatgttcag
421 gaataataac agaaagaaaa ctccaagagt gctgacaagt gacaaccagg agatgcagac
481 atgcagttcc tcgatgaatg attcctgatg tccttgtaca gttgtcctca gccatttgga
541 acaatgggga ttctttgccg gtatgctcta tcatcaggaa ggaacatttc tgtgagaaga
601 gctgctacaa gatatgtatg agttagttaa aagaaaaaaa aagatactag aaaccaaagc
661 tacagaagaa gcaattagag gggcctaact catcattgtg agcctgaaca taatgcagtg
721 ttaaagataa gtcaacaaag cttcttgtct gagtccactt atgttctgaa aatggcatgg
781 catgcagatc agacaggaca tattgctgca gcacctatta atctgcctac tccttaagca
841 ctaagaaaga aatatatact aaagtgttta ttccagttat ttttaggtgg gacaagatac
901 tcctgagtaa acaacccatc attactttgt gatacaatta ggcaggccaa tcatggagct
961 aaatggaata gaacttgctt agggatagct tataggtttt ctctttgcac cttaatagat
1021 cttcacatcc ttgttaagag acgtgccttt aaatgattaa attaaggaag tacatgcaag
1081 tggtaaagct tttcgggaat acgcaaggag cgcatttttt ccattaagag aaataaaagt
1141 tatttacatt tgaaagagaa aaacagcacg ggactgatac aggacaataa cagacaatcc
1201 taggtctatc tctcgcgcaa gtggtaaagc tgataggtga aaagatgagt gtctttctaa
1261 taaagcttct caccttacat gtaaagaaca gatactaaat attatgttaa catggaacgt
1321 aaggagctgt cattgtacaa agaggatcaa cagcaaagta atatttcttt tctagtatat
1381 aataaagttt gtacaatcca atagattctt aggagctatt ttttcttcaa gtgaggattt
1441 tgatgcatat atgtaggcat catggaatca tatgccttgc ttccacatta acttaagagc
1501 agtctgaata agcataggtc atccaacttg tcaggtttaa tcgattttgg ttagaaaagc
1561 aaagattatc tgtactaatg cagagggacc aaatggccat cttgagttac tttaccaagg
1621 tctcatgtgg gcagaaaagg caaagcttat ggtaaaatgg gcaatgatga gaaatgtgct
1681 ctccagtgtg tcaccacaag cactaagaca ctatctaatg gttggaaaac gtcacaggaa
1741 ccatagaaga agatcccagg ttcatcataa tagaagctga acaaagagag cagagcaggg
1801 gagcatgctt actttcagga aaagattgaa gtggactgaa gtttcaactg gagctccaat
1861 agacaccaca ttccccacca agacacaagt ttgggagaag agaatccatg aagagctctt
1921 cagttgcacc aaggctgaaa caggagagac aagatgactg taagtttcag gaaggtgatg
1981 tgaacagcct tgagcttcgg cttggcatat cttccgacaa tgaccagatc agtggtggtg
2041 gtgctgctag tccatggctt ggtgtgggag tgcacccttg gagcctggct gcaaggcaag
2101 ggaaggcagc cttggagcaa gctcaccaga ggcctaatga atgtgctgtc caaagagaaa
2161 accgcgcggc ttcatcagct cagctggtgg gatggccacc ggtgcgcgca ttccgcaaga
2221 acctgtccac cccaaaacct gcagatgcag atgacctgat gaacaaggtg aagctctgct
2281 ctgatgaggg ccatggctcc agatgtgcag cccaagagag gaggtcatca tcaaccatgt
2341 ttgtgaaggt gaacctggag ggctatgctg tcggaaggaa gatcgacctg aaggcgcacc
2401 gcagctatga ctctctgtcc caggctctgc agagcatgtt ccatggcttc ttgtcagatg
2461 gcattgcaac tagagacaat gagctgcagc agatggagga gggcagcaag aagaggtatg
2521 ttcttgtgta tgaggataat gagggagacc gcatgctcgt cggcgacgtc ccatgggagc
2581 tgttcattgc ttcagtgaag aggctctaca ttgctcagga tcctagagtt catgcgaagc
2641 tacgataata gcaatgttgc aagctgatcc tgaaagcctg gaccgcaacc gaggatgaga
2701 aagatcgatt gctgctttta tcatgagcag atgcaaggaa atatatatat ggcataggat
2761 gacaggagca tcatattcaa agagacgaag cagcaatatg tgctagtgtt tagctgacat
2821 gctgtccctg ttcgcttaat tagtagaatg attaaatttg ccttggttgt gcttgaggga
2881 gctagtgctc atactagact atactaattc cctaaaaaaa aacaacaaaa aaagtagact
2941 tctagtgcgg ttaatgtaga aagttttggt tgtgtatata ttttttgacc tgttgtacta
3001 taattgaact gatggtgcat tagctagtgc ttgttaatta gcttgtacta tgtgtgtggg
3061 tggatgtaaa tgacactggg tgcaataaac tagtcttggg tcc
//