LOCUS AK068213 1545 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013149K13, full insert sequence. ACCESSION AK068213 VERSION AK068213.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1545) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1545 /clone="J013149K13" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 253..1086 /db_xref="Osa1:LOC_Os12g40890" /db_xref="RAP-DB:Os12g0601300" /note="(RAP Annotation release2) Similar to Auxin-responsive protein (Aux/IAA) (Fragment)" /note="(Rice Genome Annotation Project) OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed" /note="mapping to R12-TIGRv4S1-000774R (Chr.12: short arm=25277290, long arm=25282548, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG90803.1" /translation="MAADLAFEATELRLGLPGGGGDGDAAAAAARSSSGKRGFAETID LKLKLEPAAAAVDDDDDKEEAAADDREKKVDIVGADNDDASPPAAAAAGGMKRSPSQS SVVTAAADPEKPRAPKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAA AFVKVSMDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVNGMNESKIAD LLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNR S" BASE COUNT 378 a 400 c 423 g 344 t ORIGIN 1 ggctccttta catcacattt ctagccaccc tctcatcatc accatcaagc tcaaaccaac 61 aagaagagag ctagcttttg gtactattag ccactagtag atagccaaga agaaaccaag 121 aaattctttg agctatctaa ttagctaggt ccattgattc atcatcatct ccattgatcc 181 acttagcttt gaagaagaag aagaagaaga catttagtta gctagctata ttgaggtgag 241 gtggcggcgg caatggcggc ggacctggcc ttcgaggcga ccgagctccg gctcggcctg 301 cccggcggcg gcggtgatgg agacgccgcg gcggcggcgg cgaggagctc ctccgggaag 361 aggggcttcg ccgagaccat cgacctcaag ctgaagctgg agccggcggc cgcggcggtg 421 gacgacgacg acgacaagga ggaggcggcg gctgacgacc gggagaagaa ggtcgacatc 481 gtcggagctg acaacgacga cgcctcgccg ccggccgccg ccgccgccgg cgggatgaag 541 cggtcgccga gccagagcag cgtcgtcacc gccgccgccg accccgagaa gccaagggct 601 cccaaggcac aggtggttgg gtggccgccg gtccggtcat accggaagaa catcctggcc 661 gtgcaggccg acaagggcaa ggacgccgcc gacggcggcg gcgacaagtc cggcgccggc 721 gccgccgccg ccgccttcgt gaaggtgagc atggacggcg cgccatacct gcgcaaggtg 781 gacctcaaga tgtacaagag ctaccttgag ctctccaagg cactcgagaa gatgttcagc 841 tccttcacca ttggaaactg tgggtctcat ggggtgaacg gcatgaacga gagcaagatt 901 gctgatctgc tcaacggctc tgaatatgtg ccaacctacg aggacaagga cggcgactgg 961 atgctcgtcg gcgacgtccc atgggagatg tttgttgaat catgcaagcg ccttaggata 1021 atgaaaggat cagaagctat tggccttgca ccgagggcaa tggagaaatg caagaacaga 1081 agctgagaaa gaagaacatg tcgccatcaa aaacggatgg atcatcatca gatgcaacaa 1141 tctatctata gcttttctta attgcagctt tgcctcatcc ctgtatcata ctcgcttgct 1201 gtcctcatct ccaagtctgt acctttcctg atcagtgaaa gtcattttgg tgttgtggtc 1261 agtttctgtt ctgttgcagt cattaagttc ctaagtgtgt catcttgtct tatacataag 1321 aaagaagcca agaacatgta ccagtagtac ctgtcccata attatgtctt ttttgctctc 1381 cctgttcttc cctttctatc tgtttttttt taccttaatg gcacaaaatg taaaggcacc 1441 ctgctcaaag ggacctcaat gtattttgtc catgaaaagg ttgtttaatt atcttcatgg 1501 tgtatccatc aaacaaataa ttattactgc aaggtgttat gtgtt //