LOCUS AK068112 1633 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013134M21, full insert
sequence.
ACCESSION AK068112
VERSION AK068112.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1633)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1633
/clone="J013134M21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 150..1340
/db_xref="Osa1:LOC_Os06g11320"
/db_xref="RAP-DB:Os06g0216800"
/note="(RAP Annotation release2) Similar to
Cyclophilin-40 (Expressed protein)"
/note="(Rice Genome Annotation Project) peptidyl-prolyl
cis-trans isomerase CYP40, putative, expressed"
/note="mapping to R06-TIGRv4S1-000318R (Chr.6: short
arm=5932850, long arm=5938506, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG90761.1"
/translation="MEGGGEGAESAAVASAAAAEVEVKNPRCFMDVSIGGEIEGRIVI
ELYASVVPRTAENFRALCTGEKGVGAVTGKHLHYKGSCFHRVIKGFMVQGGDITAGDG
TGGESIYGLKFEDENFVLKHERKGMLSMANSGPNTNGSQFFITTTRTPHLDGKHVVFG
RVIKGMGVVRSVEHAPVGEADRPTSDVEIVDCGELPEGADDGVVNFFNDGDTYPDWPN
DLDEKPMEVSWWMDAVESAKAFGNNNFKKQDYKAALRKYRKALRYLDVCWEKEDIDEE
KSSALRKTKSIILTNSSACKLKLGDLKGALLDADFALRESEGNAKAFFRQGQAHIALN
DIDAAVESFKHALELEPSDGGIKRELAAAKKKIADRRNQERKAFARMFQPSGKSDKDN
EESK"
BASE COUNT 435 a 336 c 481 g 381 t
ORIGIN
1 ggatggcacc cacccacaac gcagccttcg ccgtttggcc cccgaggtaa ccgacggaca
61 ccaccaccac cgcgccgcct cgcctcgtga agctccacta gtttctaggg tttagcctag
121 ccccgacccc gaggaggccc gagatcgcaa tggagggcgg cggcgagggc gcggagtcag
181 cagctgtcgc ctccgcggcg gcggcggagg tggaggtgaa gaacccgagg tgcttcatgg
241 acgtcagcat cggcggcgag attgagggga ggatcgttat agagctctac gcgtcggtgg
301 tgccgcggac ggcggagaac ttccgcgcgc tctgcaccgg ggagaagggc gtcggcgccg
361 tcaccgggaa gcacctacac tacaagggat cttgcttcca tcgcgttatc aaaggcttta
421 tggtacaagg tggagatata actgctggtg atggaacagg aggggagtca atttatgggt
481 tgaagtttga ggatgagaat tttgttttga agcatgagag gaaaggaatg ctatcaatgg
541 ctaattctgg tcccaacaca aatggatctc agtttttcat cactacaact cggacacctc
601 atttagatgg gaaacatgta gtttttggta gagtaattaa gggaatgggg gtggttcgct
661 ctgttgagca tgctcctgtt ggagaggctg accgcccgac ttctgatgtt gaaattgtcg
721 attgtgggga acttccggaa ggtgctgatg atggagttgt gaacttcttc aatgatggtg
781 atacgtatcc tgattggccc aatgatcttg atgagaagcc tatggaggtt tcatggtgga
841 tggatgctgt tgagtctgct aaggcttttg ggaataataa tttcaagaaa caggattaca
901 aggcagctct gagaaagtac aggaaagcac tgcgttactt ggacgtttgc tgggagaaag
961 aagatataga tgaagagaag agctcagcac tgcggaagac caaatcgatt atactcacaa
1021 atagctctgc atgcaaattg aagttgggag atttgaaggg tgctctgttg gatgctgatt
1081 ttgcactgcg tgaaagtgag ggcaatgcta aggcattttt tcgacaagga caggcacaca
1141 ttgcactcaa tgacattgat gcggcagtgg agagcttcaa gcatgcattg gagttggagc
1201 caagtgatgg aggaattaaa cgagagctag ctgctgcaaa gaagaagatt gccgacagaa
1261 ggaatcagga gcggaaggca tttgcaagga tgttccaacc ttctggaaaa tcagacaaag
1321 acaatgaaga gagcaagtga tccctagttt cctttccccg gcagaacttt tggtagcttg
1381 atctgggata catactggaa ccgtgaagag ggtataacaa gggagtctgc gcagctaacg
1441 caaaagacgc tgactcccta tctagataca aggaaaaaaa atagtggggg agaggatagc
1501 ctttgttttt cttttgcatt actacaaaag taattgtgcg tatcaacgct gttaaagccg
1561 agacattgaa ctgaacagca cggtttccac ttttcagact ttgctgcaag gcatgccaat
1621 ggacatttcc ttc
//