LOCUS AK068026 2558 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013131K12, full insert
sequence.
ACCESSION AK068026
VERSION AK068026.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2558)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2558
/clone="J013131K12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2558
/db_xref="Osa1:LOC_Os11g08569"
/db_xref="RAP-DB:Os11g0189600"
/note="(RAP Annotation release2) Similar to Cycloartenol
synthase"
/note="(Rice Genome Annotation Project) cycloartenol
synthase, putative, expressed"
/note="mapping to R11-TIGRv4S1-000220F (Chr.11: short
arm=4518387, long arm=4553813, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 669 a 539 c 642 g 708 t
ORIGIN
1 gggtcggtaa acaatctcct cggccggcaa gtgtgggagt tcgaccctga cctcggcacg
61 ccagaggagc gcgccgatgt ggagaaggcg cgccgcgagt tcgccgagca ccgcttcgag
121 cgcaagcatt ctagcgacct cctcatgcgg atgcagcacg ggaagacggc tagctacttt
181 gggctgagtc agagctgtgc gctaaactga acctaattca cactaaacta cttcctccgt
241 ttcacgattt cgctaaagaa aactgtcaaa agctggacct tctcgctgtc aagcgtggag
301 agcacgaaga cgtcatgggg gaagctgtgt ggagctcttt gaaacgggcc ataagccgcg
361 tttgtaattt gcaggcacat gatggacact ggcccgggga ttatgcagga cttatgttct
421 ttttgcctgg cttgattata acattgcatg tcagtggagt tctgaacact gttttatcat
481 cggaacatca gaaggagatg cgccggtaca tctataatca ccagaatgaa gatggagggt
541 gggggttgca cattgagggc cacagcacca tgcttggctc atccctgaac tatgttgctt
601 tgagattgct tggggagggt ccaaatggtg gagatggatg catagagaat ggtcgaaact
661 ggattttaga tcatggagga gccacattta cgacatcatg ggggaagttc tggctctcgg
721 tacttggagt atttgattgg tccggtaata acccagtgcc accagagtta ttactattgc
781 cgtatcaact gccgtttcac ccaggtcgaa tgtcgagcta tatccgaatg gtgtttatac
841 ccatgtctta catttatgga aaaaggtttg ttggcccagt aacagttgtg ctagagctaa
901 gaagtgaact atacaatgac ccctatgatg agattgactg gaacaaagct cgtactcagt
961 gtgcaaagga agatatgtac tatccacgtt catccaaact ggatatgttt tggtcctttc
1021 tccacaagtt tattgaacca gttttgttgc gctggcctgg gagaaaactg agggagaaag
1081 ctctggccac ttccatgagg aatgttcact atgaagatga gtgcactcga tacatctgtt
1141 tcggtggtgt acccaaggca ttaaatatcc ttgcttgctg gattgaagat ccaagctcag
1201 aggcattcaa atgccatatt gcacgcgtat atgattattt atggatcgct gaagacggca
1261 tgaagatgca gatttacgat ggcagccagg tgtgggacgc aggtttgaca gttgaggccc
1321 ttgtggctac tgaccttgtc aaagagcttg gaccaactct taaacgagcg cattccttcc
1381 ttaagaattc gcagttgctt gacaattgcc cccgagattt caaccgctgg tatcgccata
1441 tatccaaagg tggatggaca tttacaacag ctgatgatgg ctggcaagtt tcagattgca
1501 cggcgacagc actgaaggca tgtctattgt tatcaaggat atctcctgaa atcgttggtg
1561 aaccactgga aattgatgca caatacgatg ctgttaattg tctgatgtct ttgatgaatg
1621 ataatggtgg cttttcagca tttgaactcg taaggtctaa tacatggctg gagcatatta
1681 atcctacaga ggcatttggg cgtgtaatga ttgaatatcc gtatgtcgaa tgtacatcat
1741 catcaattca gtgtctagca ttattcaaaa aacttcaccc agggcaccgc aaggaagagg
1801 tggaaaattg tatcagcaaa ggtgctaatt tcattgagag ttctcagaga agcgatggtt
1861 catggtatgg ttcttggggg atttgtttca cctatgccac atggtttgca gtgacaggat
1921 tagtttctgc aggcaggaca cttgggaata gcgctacagt tagaaaggca tgtgactttc
1981 tcttgtcaaa acagcttcct tcgggtggct ggggcgagag ctatttgtca tgtcatgacg
2041 aggtttacac aaatcttaaa ggcaaccgac ctcacggtac gcacactgcg tgggccatga
2101 ttgcactaat tgatgcaggg caggctgaaa gagatccagt gcctctgcat cgagcagcca
2161 aggctttgct caacttgcaa ttagaggatg gagaatttcc acagcaagaa attgttggag
2221 tctttctcca aactgccatg atcagttatt cccagtacag gaacatcttc cctataatgg
2281 ctctcacagg gtatcgccgc cgagtactgc ttgcaggcaa catataggag catgatttta
2341 agttatgcca gctcttggca tgttggtttg ccaataaagt tacatttcac ctcccctagc
2401 agcagtactc tctactgttc tagcgtttgt attttgtatt ttctaagaaa aaaatgtttt
2461 accgcattta cttagttccc tttgtttgta ataaaacatg gaacatactg cttccttgta
2521 gttacacgtg cgttctaata agaaacatta ttatatct
//