LOCUS AK067988 1777 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013123D05, full insert
sequence.
ACCESSION AK067988
VERSION AK067988.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1777)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1777
/clone="J013123D05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1777
/db_xref="Osa1:LOC_Os05g09500"
/db_xref="RAP-DB:Os05g0187100"
/note="(RAP Annotation release2) Similar to Hexokinase"
/note="(Rice Genome Annotation Project) hexokinase-1,
putative, expressed"
/note="mapping to R05-TIGRv4S1-000251R (Chr.5: short
arm=5316683, long arm=5320499, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 432 a 406 c 499 g 440 t
ORIGIN
1 gagagacctg tgtacgcgat cttggttagc tccggccttt gatcttgacc accaatctcg
61 catttcttgg atcttctcgt cttcctcact cctcgatcga tccatcgatt ggttgctggt
121 cggagaccat ggtggcggcg gcggtggcgg cggcggagca ggtggtggcg gcgctgcggg
181 aggagtgcgc gacgccggcg gcgcggctgg atggggtggc ggcggcgatg gccggcgaga
241 tggcggcggg gttggcggag gagggcggca gcaagatcaa gatgatcgtt tcctacgtcg
301 acaacctccc caatgggacc gaagagggct tgttctacgc gctggatctt gggggaacaa
361 acttccgagt cctgcgtgtg cagcttgctg gaaaggagaa acgggtcgtg aagcgcgagt
421 cgagggaggt ctcgatccct ccccatctca tgtccggcaa ctcctcggag ctgtttggct
481 tcatcgcttc cgcgttagcc aagttcgtcg ctgatgaagg acataatgcc gtgttcaacg
541 acaggcaaag ggaactgggg ttcaccttct ctttccctgt gcggcaaaca tcgattgcgt
601 ctgggactct tatcaagtgg accaaggcgt tttctattga tgatgctgta ggtgaagatg
661 tggtggccga attgcagatg gccatggaga agcaaggtct ggacatgcgc gtttccgcat
721 tgaccaatga cactgttggg acattggcgg caggcagcta ctacgacgaa gatattgtcg
781 tcggtgtgat cttaggcact ggctcaaacg ccgcatatct tgagaaggca aatgctatcc
841 ctaagttgga aggcgagtta ccaaaatcag gaaacatggt tattaataca gaatggggta
901 acttctcctc atcctgtctt ccaataacag aatatgatga agcactagat aaagagagct
961 taaaccctgg agagcagatc ttcgagaaat tgatttcagg aatgtatcta ggtgaaatcg
1021 taaggagagt gcttcttaaa atatctttgc agtcttcaat ttttggcaat ctagatcaga
1081 ccaagctcaa aacccgcttt attctgagga ctcctgatat ttccgtgatg catcatgatg
1141 gaacacctga tctcagaatt gtggctgaaa aacttgcaga taacctgaag gtaatcttca
1201 tcagtaaatc cagcattgaa ctgtattccc tctatccatt ttatgcacaa tgaacacatt
1261 acacggcatt gtccactttt accacagatc acagacacat ccttagaaac aaggaagatg
1321 gttgtcgaaa tctgtgacat cgtcacccga agatcagacc ggctggctgc tgctgggatc
1381 gtagggatcc tcaggaagat cggcagaggc gtcccaggcg acaagcgaaa gtcggtcatc
1441 gccatcgatg gcggtctata tgaacattac accgaattcc ggcagtgcct ggagaccacg
1501 ctgacggagt tgctcggaga agaggcgtcg aagtcggtgg ctgtcaagct tgcaaacgac
1561 gggtctggcc ttggagctgc actgattgca gctgctcatt ctcagtacct gaattgattc
1621 cccatagaca gagttccaac ttttattagt gactcagtgc tgttgttata gtttatagaa
1681 tgtggtgaag ttctgtatgt ttcgaaggag cctgatggac tctacaaaca aaattttcag
1741 aaatgaaatc gaagccaaat gtgttggtgg tgttgcc
//