LOCUS AK067969 2716 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013122F06, full insert sequence. ACCESSION AK067969 VERSION AK067969.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2716) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2716 /clone="J013122F06" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 39..2420 /db_xref="Osa1:LOC_Os10g36250" /db_xref="RAP-DB:Os10g0506800" /note="(RAP Annotation release2) Nuclear protein SET domain containing protein" /note="(Rice Genome Annotation Project) TPR Domain containing protein, expressed" /note="mapping to R10-TIGRv4S1-000553R (Chr.10: short arm=19044510, long arm=19049892, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG90688.1" /translation="MERLKSAVPAELRRAVGEGTAADLPSTTSRLLAFLEALPLFRQV IGELTDPELALCRKDKGRAAELKGKGNACFSKREFEQALGFYSQALRYFPISPDGTDA SLIATLYVNRASTMHKLGLLEECLRDCDRAISVSPNYAKAWYRRGMVNASFRNYSSSI HDLEVALSMEVTSSGKSNIEQELKLILQKHQNVNEVGTASSNCINADMPHTEQQPKVI LECTSTPNKGRGMSSPNDISPASLIHAEDPLAVIIMKSCRDTHCHYCFSEAPADVVVC PSCTIPIYCSNRCQEKAIGQMSCNQNTHLESNNNVVDIAKLSVTSTKSKTPDSKQIAE HRHECGGACWAAVLPADIVLAGRIMAQYIEKQLLVGKRSTISGPNLDLVHHYDQDSSA SKFESHIYATVLFLCLQSYYKSGVSWAEDSLSQLVLLICQIKVNSIAIVHMKSMDGVK ALTKGFSGFSGDVMCSVEQVRVAQAIYMSGSFFNHSCRPNIHAYFHSRTLILRSTEYI KAGSPIELSYGPQVGEMDLPERQKSLRENYYFSCGCSSCSVLSLSDLVMNSFCCPQSN CLGAVSELIHHRHKENFVHVSIGESHVCTLSLPDVSKFDEDIVKVGKLFFKSDTMFNI DPGFCMSCRSQLDLSSAVAMSDRATSKINRLKELPSLDNVPEVLIAEALQSLERIEKL RHPYSKTLAQSHDTIAEAFAKVGDQEQARKHCEASIKILEKLYHPRHIIIAHELIKLV SIELSMGDGASAAAAFARADAIFSLYYGPDVERILPYVDVLRRTVSERSIDSC" BASE COUNT 754 a 582 c 626 g 754 t ORIGIN 1 ggcgctgctg cccacagccc acacactctc cctcgcccat ggagcggctc aagtcggcgg 61 tgccggcgga gctccggcga gccgtcggcg agggcacggc ggccgacctc ccctccacca 121 cctcccgctt gctcgccttc ctcgaagctc tccctctctt ccgccaggtg attggtgagc 181 tgaccgaccc ggagctcgcg ctgtgccgca aggacaaggg gagggcggcc gagctgaagg 241 ggaaggggaa tgcgtgcttc tccaagagag agttcgagca agcgcttgga ttctactcgc 301 aggcgttacg gtacttcccg attagtcctg atggaacgga tgcaagcttg atagccacat 361 tatatgtcaa ccgtgcctct accatgcata aattgggcct tttggaagag tgtctgcgag 421 attgcgacag ggccatttct gtttcaccta attatgctaa ggcatggtac agaaggggga 481 tggtaaatgc atcttttagg aactattcat cttccataca tgatttggag gttgctttga 541 gcatggaagt aacctcttct ggaaagagta acatagaaca agagttgaag ttgattttac 601 aaaagcatca aaatgtgaat gaagttggga cagcaagcag caattgcatc aatgcagata 661 tgccacatac agagcaacag cctaaggtta ttctagaatg tacctctaca cccaacaaag 721 gtagaggaat gtcgtctcca aatgatattt ctccagcctc actgattcat gctgaggatc 781 ctcttgctgt gattatcatg aaatcttgcc gggatactca ctgccactat tgctttagtg 841 aagctccagc agatgtcgta gtctgccctt catgtacaat acccatttac tgttcaaaca 901 ggtgccagga gaaggctata ggacaaatgt cttgtaatca aaatactcat ctagaatcta 961 acaataatgt ggtggatatt gcaaaattga gtgtaacttc tacaaagagc aagactccag 1021 actctaaaca aattgctgaa cataggcatg aatgtggagg tgcctgttgg gcagctgttt 1081 tgccagctga tatagtttta gctgggcgga taatggcaca gtacatagag aaacaattgc 1141 tggtcggaaa gagatctacc atctctggtc caaatctgga tctcgttcac cactatgatc 1201 aagattcttc tgctagcaaa tttgagtcac atatatatgc aactgtcctg ttcttatgcc 1261 tccagagcta ttataaatca ggtgtctcgt gggcagagga ttctttatca cagttggttc 1321 ttttgatatg tcaaattaaa gtcaactcaa ttgcaattgt tcatatgaaa tccatggatg 1381 gagtcaaggc gctgacaaag gggttttctg gatttagtgg tgatgttatg tgtagtgtgg 1441 aacaggtcag ggttgctcaa gctatttaca tgtctggtag ctttttcaac cactcgtgcc 1501 ggcccaacat acatgcatat tttcattcgc gcactctcat tctaaggtct acagaatata 1561 taaaagcagg tagcccaatc gagctgtcat acggcccaca ggttggtgag atggatcttc 1621 cagagagaca aaagtcactt cgggagaatt actacttcag ttgtgggtgt tcaagttgtt 1681 cagtactaag tctatcagac cttgtcatga attcattttg ctgtccgcaa agtaattgcc 1741 ttggagctgt atcagaatta attcatcata gacacaaaga gaattttgtg catgtttcca 1801 taggagaatc tcatgtctgt acattatcat tacctgatgt atctaagttt gatgaggata 1861 tagtgaaggt tggaaaacta tttttcaaga gtgataccat gttcaacata gatcctggat 1921 tctgtatgag ttgcagatcc caacttgact tgtcttctgc tgttgctatg tcagatagag 1981 caacatcaaa gataaacaga ttgaaggagc ttccatctct agacaatgtc cctgaagtcc 2041 tcattgcaga agcactacaa tccttagaac gcattgagaa gttaaggcac ccatatagca 2101 agactcttgc tcagtcacac gacacaattg ctgaggcctt tgctaaggta ggagatcaag 2161 aacaagcaag aaaacactgt gaagcatcca tcaagattct tgagaagctt taccacccca 2221 ggcacatcat catcgcgcac gagttgatca agctcgtctc catcgagctt tccatgggag 2281 atggcgcaag cgcggctgct gcattcgccc gggcagatgc gatattctcg ctgtattatg 2341 ggcctgatgt agagaggatt ttgccctacg ttgatgtgct cagaagaact gtcagtgaac 2401 ggtctattga ttcatgttga caatcttaca gtatgtgtat cagtacatgc tgttgtatca 2461 gcaattagta gacaaatcta gaaaaagaga tcagattagt tagacccatt acgttacaga 2521 aatctagaaa aaatagagca tattagttaa acccatctac tacattacag tcttgcccct 2581 gtgttttatg aattttcttc tgggattttc tgaaacctac atgatttctg aaatttcatt 2641 agcatttgca gtgtcaaaag aggatggtac tagagtaata ataagatagt aaagcctggt 2701 agggctctgt tttttg //