LOCUS AK067899 2144 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013122C21, full insert
sequence.
ACCESSION AK067899
VERSION AK067899.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2144)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2144
/clone="J013122C21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2144
/db_xref="Osa1:LOC_Os09g16330"
/db_xref="RAP-DB:Os09g0332700"
/note="(RAP Annotation release2) Similar to PDR-type ABC
transporter 2 (Fragment)"
/note="(Rice Genome Annotation Project) PDR5-like ABC
transporter, putative, expressed"
/note="mapping to R09-TIGRv4S1-000231R (Chr.9: short
arm=9969572, long arm=9978349, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 524 a 502 c 567 g 551 t
ORIGIN
1 gatcttcttc gacgcgtcgc gccggtgagc actcacactc tcaccggcgg cgggcggcgg
61 cgggatcgat ggacgacgcc ggcgagatac acgcgctcgg gggcagcctg cggcgggagg
121 cgtcgtcggc gcggtcgggc gacgccgccg tgttcttctc gcggtcgtcg tcgagggatg
181 aggacgacga ggaggcgctg cggtgggcgg cgctggagaa gctccccacc tacgacaggg
241 cgcggacggc ggtgctggcc atgccggagg gcgagctccg ggaggtgaac gtgcagcgcc
301 tcggccccca ggagcggcac gcgctgctgc agcgcctcgc ctgggtcggc gacgaccacg
361 cccgcttcct ctccaagttc aaggaccgcg tcgacagggt tgggatcgag ctgccgacga
421 tcgaggtgcg gtacgagaac ctgaatgtgg aagcggaggc gtacgttggt agcagaggtt
481 tgcccaccat cctcaacacc tacgccaatg tgctggaggg tctggcaaac actcttcaca
541 taacaccaaa taggaagcag aaaatatcga tccttcacaa tgtcagtggg ataatcaagc
601 ctcacagaat gaccttgctt ttgggtcctc ctggcgctgg aaaaaccaca cttcttttgg
661 ccttggctgg aaatgtccct tcaggtctaa aggtatctgg acaaataaca tacaatggcc
721 ataccatgga tgaattcgag ccccggagat cagcagctta tgttagtcaa catgatctac
781 atatgggtga attgacggtt cgtgagacag tcaatttctc tgcaaaatgt caaggaattg
841 gccaccgtta cgatctgcta atggaactat caaggagaga aaaggaagaa aatattaaac
901 cagatccaga agtagatata tacttgaagg ctgctgcaac aggagagcag aaagccgagg
961 tggtcacaaa tcacatacta aaggtcttgg gattggatat ttgcgctgac acaatcgtag
1021 gcaacaatat gttgagaggc atatcagggg ggcagaaaaa gagagtaacc acagctgaga
1081 tgattgtcac cccaggacga gcccttttca tggatgagat atcaactgga cttgacagct
1141 ccacaacata caatattgtg gactccatcc ggcagaccat ccacattgtt ggtggaacag
1201 cagtcattgc tttgttacaa cctgcaccag agacatatga attgtttgat gatataatcc
1261 tcctctcaga cggtcaggtc gtctacaatg gtcctcgtga acatgtgcta gaattctttg
1321 aatcagttgg cttcaaatgt cctgagagaa aaggcgtgca gaattcttct tccgttcagc
1381 cagttgtgtc tgttgaacgc actgtgttct acagggaacg agcagctcac atgtattcac
1441 ctttgccata cgccttggga caggttgcaa ttgaacttcc atacatcctt gttcagtcct
1501 taatatatgg tgttctagtg tatgcaatga ttggatttga gtggacagct gccaagttct
1561 tttggtacct gtttttcatg tatttcactt tatcatacta cacattttat ggcatgatgt
1621 cggtgggtct gactccaagc tataacgtgg cctctgttgt ttccactgca ttctatgcca
1681 tatggaacct tttctcagga tttataatac caagaactcg aattccaata tggtggagat
1741 ggtactattg ggtctgccct gttgcgtgga cactctacgg gttggtaact tcacagttcg
1801 gggatgtaac tgacacgttt gataatggtg tccgtatatc tgactttgtc gagagctact
1861 ttggttacca tcgtgacttc ttgtgggtgg ttgccgtgat ggtggtctca tttgccgtcc
1921 tcttcgcctt ccttttcggg ctctcaatca agatattcaa cttccagaag agataaattg
1981 aggaaggcat acccgagttg tgtatagcat gtgaatacta gcacatcgta attgtacagc
2041 ttgaaagcac atttgtatca ccataattgt acatcttaaa gcacattgtg tatcctggaa
2101 ttcatggtac tcagattaac aagttgtttc attgagtttt ttgc
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