LOCUS AK067807 3099 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013120L22, full insert
sequence.
ACCESSION AK067807
VERSION AK067807.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3099)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3099
/clone="J013120L22"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 495..2693
/db_xref="Osa1:LOC_Os03g08370"
/db_xref="RAP-DB:Os03g0181600"
/note="(RAP Annotation release2) Similar to GATA
transcription factor 25 (ZIM-like 2 protein)"
/note="(Rice Genome Annotation Project) transposon
protein, putative, unclassified, expressed"
/note="mapping to R03-TIGRv4S1-000310F (Chr.3: short
arm=4251989, long arm=4256583, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG90612.1"
/translation="MQFEDGGDVHVGAGEGEDGGRVTVDELTRCLRCGISANATPHMR
RGPEGRRTLCNACGIAWAKGKVRKVIDSDTPMDNAMFAQMVPELSMEFDDEDKAYEFY
NRYAGHVGFSVRKSSSDKSAENITRSRTFVCSREGFRKDKKGAKEVKRPRPETRIGCP
ARMSIKITSDGKYRISEFVPDHNHQPAPPSTMHMLRSQRVLTELQTTEADSSEESATP
SRFSSCSLVKQAEVIRHTNFLPAEYRCSLCSKRKKNMQPGDAGVTVKYLQSMQLSNPS
FFYAVQLDEDDKLTNIFWADSKSRTDFSYYSDVVCLDTTYKINEHSRPLTLFLGVNHH
KQISIFGAALLYDESEESFKWLFDTFKIAANGKQPKTILTDWSMAATTASAITAAWPG
TVHRLCPWQVYQNSVKHLNHIFQGSKTFAKDFGKCVYDYDDEENFLLGWNTMLEKYDL
RNNEWIKKIFDDRDKWSPVYNRHVFTADIKSSLQSESVRNALKKSLSPQFDLLSFFKH
YERMLDEFRYAELQADFHASQSFPRIPPSKMLRQAANMYTPVVFEIFRREFEMFVDSV
IYSCGEDGNAFEYRVAVTDRPGEHYVRFDSGDLSVVCSCKKFEAMGIQCCHVLKVLDF
RNIKELPQKYFMKRWKKDVKSASTGNQELLNGGVSQIPSSYLNVPVPFIDPQHVQSNN
ELNHDTSVSNSHQQALHGGAQGSQGYAPLAGIQQQQFIGNFRLNHETGFL"
BASE COUNT 895 a 650 c 699 g 855 t
ORIGIN
1 ggagcgttcg tcactcgcat ctcctccgcc tccggtatcc aacctcccgc accaaatccc
61 aatccggatc ccccacgcta aaccctagct ttaaaccccc gaatccaacc aatccccgcg
121 ccgattcccg ccatttcgcg cacctcgtgc caggatctgc tcctgggcgg cgctctttta
181 gaaaaaaacc tggcagattt cgacttctgc aatggagccc gtcgatttcg gtgggggcaa
241 aggttatgga aggaatctct gtctgagcaa cgatctgatc cttctggagt aaggttttgt
301 gctgggtgga tttgggattc gatgtggctg gagttgagct catctcgggg agaagggatt
361 cggacggtgt ttgatctttc tgtcgtgatt gctttgcttc gggtttgctc agcgctagaa
421 gatttgctcg cagaatcccg cgcggagttt tgaagaaagc ttggtatttc ctggttcgtt
481 gtggtttgta agcgatgcag ttcgaggacg ggggagatgt tcatgttggt gccggtgagg
541 gtgaagatgg tggcagggtc acagtggatg agcttaccag atgtctacgt tgtggcatca
601 gtgcaaatgc gacgcctcat atgcgccgtg gaccagaggg acggagaact ttatgcaatg
661 cttgtggtat agcatgggca aagggaaaag tgcgaaaagt tattgattct gataccccca
721 tggataatgc catgtttgca caaatggttc cagaacttag catggaattc gatgacgaag
781 ataaagcata tgagttctac aacaggtacg ctggacatgt gggattcagt gttcgtaaaa
841 gttcatcgga caaatcagct gaaaacatca caaggtcaag aacctttgta tgctcgagag
901 aaggttttcg taaggacaag aaaggagcta aggaagttaa aagaccacgg ccagaaacaa
961 gaatagggtg tcctgcacga atgtcaatta agattacatc tgatggtaaa tatcgtatat
1021 ctgaattcgt accagatcat aaccatcagc cagcaccccc atcaaccatg catatgctga
1081 ggtctcagag agtactcact gagctgcaaa caactgaagc agactcctca gaagaatcag
1141 cgacaccatc aaggttttct agttgctctt tggtgaagca agcagaagta attagacata
1201 ccaattttct ccctgcagaa tacaggtgct ctctttgttc aaagcgcaag aaaaatatgc
1261 aacctggtga tgcaggagta actgtaaagt acctgcaaag catgcagcta agcaaccctt
1321 ctttctttta tgctgtccag cttgatgagg atgacaaact gacaaacatt ttctgggccg
1381 attccaaatc tagaaccgac ttcagctact acagtgacgt ggtttgtttg gacacaacct
1441 acaagataaa tgaacatagc agaccattaa cactattcct tggagtgaac caccacaagc
1501 aaatctccat atttggtgct gccttgcttt atgatgaatc agaagagtct ttcaagtggc
1561 tatttgatac attcaagatt gctgcaaatg gaaagcaacc aaaaacaatc ttgacagatt
1621 ggtctatggc agcaactacg gcttctgcga taacagcagc atggcctgga acagttcatc
1681 gcctttgtcc atggcaagtg taccaaaact ctgtcaagca ccttaatcac atctttcaag
1741 gctccaaaac atttgcaaag gatttcggaa aatgcgttta tgactacgat gatgaagaga
1801 acttcttgct tggatggaat actatgctag agaagtatga tctacgaaac aatgagtgga
1861 ttaaaaaaat atttgatgat cgtgataaat ggtctccagt atacaatcgc catgtattca
1921 ctgcagatat aaaaagttct ttgcagtcgg aaagtgttag aaatgccttg aagaagtcct
1981 tgagtccaca atttgacctg ttatctttct ttaagcacta tgaaagaatg cttgatgagt
2041 ttcgttatgc agagttacaa gctgattttc atgcaagcca aagcttccct agaattcctc
2101 catccaaaat gctgagacag gctgctaaca tgtacacacc agtggtcttt gaaatttttc
2161 gcagggagtt tgagatgttt gtcgattccg tgatttatag ctgtggagag gatggaaatg
2221 cattcgaata tagagtagca gtaacagata ggcctgggga acactatgtt aggtttgact
2281 ctggcgactt atctgttgta tgcagttgta aaaaatttga agcaatgggt atccagtgtt
2341 gccatgtgtt gaaagttcta gatttcagaa atataaagga gttaccacaa aaatatttca
2401 tgaaaagatg gaagaaggat gtcaagtctg caagtacagg caatcaagaa cttctgaatg
2461 gaggagtttc acaaattccc agctcttatt tgaatgttcc cgtgccattt atagatccac
2521 aacatgtgca atcaaataac gagcttaacc atgacacttc tgtttctaac tcccaccagc
2581 aggcccttca tggaggtgca cagggaagtc agggttatgc tcccttagca gggattcagc
2641 agcagcagtt tattggaaat tttcgcctga accatgaaac aggtttctta tgaaaaacag
2701 aactggcgct tttgccctgt tcttgtcttc caaaaacttt tttgctctgt tattccaaag
2761 acaatgacac aagacatcga aacagtctct agtctctacc tttacatctc ccttgtaaat
2821 tctaattcat atttcgtagc atcacaaata tacaagctca atagttttca ggaaactacg
2881 ttcagagttt aaacgctgtt ggaccttgga ggaagtaccc gctaagacat aagtctgatt
2941 attggcctaa aataaggttg tattattagc atatgtgatg tagtatatac agacatacag
3001 ttcgtagttc tggtgatttt gcagaagctt tcaattgctt cgctgccaaa tggccacttc
3061 aaccatgcac tcttttaatc taatgctctc actgtttcc
//