LOCUS AK067761 2131 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013119O04, full insert
sequence.
ACCESSION AK067761
VERSION AK067761.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2131)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2131
/clone="J013119O04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 207..581
/db_xref="Osa1:LOC_Os02g47110"
/db_xref="RAP-DB:Os02g0699300"
/note="(RAP Annotation release2) Similar to
ADP-ribosylation factor-like protein"
/note="(Rice Genome Annotation Project) ADP-ribosylation
factor, putative, expressed"
/note="mapping to R02-TIGRv4S1-001203F (Chr.2: short
arm=28749300, long arm=28752676, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG90583.1"
/translation="MGQAFRKLFDAFFGTSEMRVVMLGLDAAGKTTILYKLHIGEVLS
TVPTIGFNVEKVQYKNVMFTVWDVGGQEKLRPLWRHYFNNTDGLVCFVSFVVIFLGIR
ERFVHRCIKEGKKWLFDFDRLV"
BASE COUNT 582 a 354 c 485 g 710 t
ORIGIN
1 gtcttgcctc aagtccctca acaaacgaac gctgcttttc gacgaagaaa aggagggttc
61 ctcgctctga cgccttgcgc agttgtaccg tacattcgta ctaccacaca gcttgaagaa
121 gaagagggaa ttcgacgaga aatagtagaa gcttggcgtt cgtgcgagga attctcggtg
181 gttgatcgat ccgtgtttcg cggcggatgg ggcaggcgtt ccgcaagctg ttcgatgcct
241 tcttcggcac cagcgagatg agggtcgtga tgcttgggct ggatgccgcg ggcaaaacca
301 ccatcctgta caagctgcac atcggggagg tcctttcgac tgttcctacg attgggttca
361 atgttgagaa agtacagtac aagaacgtga tgtttacagt atgggatgtc ggtggccaag
421 agaagttgag gcctctgtgg aggcattact tcaataatac ggatggtttg gtatgttttg
481 tttcctttgt ggttatcttt ttgggaatac gtgaaagatt tgtgcatcgt tgcattaaag
541 aaggaaagaa gtggttattt gattttgaca gacttgtgta atgatatagt attatatagc
601 cattctgcat aggttattgt ggttgacttt gagacaaata tttcttagtt tgacttattg
661 gttaaagttg tatggcatgt atgcaattgt tttatccaaa gtatccataa ggctggtgag
721 gttgctagat gatcctttga acatttttaa ttaaaaaatt aaatgcatac caatattgat
781 accgcaaata tgtgtgttta aaatctatgg taattcgatt tgaatttatg tggagttata
841 gaactcattt atttaaacaa ttatgatagt gagataaccc aaatgagtgg tatagaattt
901 cccagttctc ttttaattaa catgaaaact tacggatcta gaagtaccct gtgcttggca
961 tactatctat tttcatgtaa tggtattgta atataatata atcatgctta attatccagt
1021 taatggataa tgttgtcgag tttgtcagat ctttcactgt atgagattat agcaatgttt
1081 ctactaattc aacacttaat gaattgctct tttgttgata ctgtaaatga tatctttgct
1141 tgatttgatt tggtttgatt tattacagct gaacagagcc atctttccag atataagctc
1201 attctggatt attttgtgct atattaccta atgaagttac taattagcta atgttatgtc
1261 tataatgtaa accatactac tcttcagtta ctaattagat gatgctcgtc agtaaaactt
1321 tattctattt tcttgttgat ttgttttcct tgagagatcg gcgtgatact gaaattcgga
1381 tgtattcatg agcataccca actacattta taaattgtaa tagcaactta ttcctatatg
1441 ttatttttgc acgttctgat ttgcagatct atgtagttga ttcattggat agagagagaa
1501 tcggaaaagc gaaagcggag tttcaggcaa tcgttaatga tcctttgatg cttaacagtg
1561 taatattggt atttgccaat aaacaagata tgaaaggggc aatgacgccg ttggaggtgt
1621 gcgaaggcct tggcctctat gatttaaaga atcgcatctg gcatatccaa ggctcttgtg
1681 ccctcaaagg tgatggtctt tatgagggct tggactggtt ggcaagtact ctgaagggac
1741 tggaagcctc aggtcgcctc ccctcaggag ggacctcatt gttctaagta gcaggtctgc
1801 ctgtaagatt cttccgttga cactaacaat ctttgcatca aagatgatca tgggaacaaa
1861 ttatcttggt gtggaaggcc ttacatggtc acaccttaca ttgctcaggc gatatgcttc
1921 gcggtgtcga ttctactgaa ggcaaaagat gcatgagagc ctgactactt gaaacattac
1981 cactgcagtt ttgtcatggg tagtagtgta gtagtaccca tcgagtcttg tgaatttcct
2041 tgaatgttac agctaactat cggatgcatt tgttcacatg tgatgagtga aacgcatgtt
2101 gatgtaaaaa gtttgtgtaa agttatgttt g
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