LOCUS AK067751 2637 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013116L22, full insert
sequence.
ACCESSION AK067751
VERSION AK067751.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2637)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2637
/clone="J013116L22"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2637
/db_xref="Osa1:LOC_Os04g55510"
/db_xref="RAP-DB:Os04g0648800"
/note="(RAP Annotation release2) Zinc finger, RING-type
domain containing protein"
/note="(Rice Genome Annotation Project) zinc finger,
C3HC4 type family protein, expressed"
/note="mapping to R04-TIGRv4S1-001128F (Chr.4: short
arm=32803806, long arm=32809288, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 691 a 578 c 618 g 750 t
ORIGIN
1 gtctttctcc ttctcctcct ccttcctctc gctctctcct ccttgacaaa atttcctcca
61 cccattccct tctccaccca ccctgccgat ctctctgaat tcggtcgcct cctccgcacc
121 atctttctct cctcctctct tctagcaatc ggtcgtttcc tccggttgtt gtgctgattc
181 ttcgttcttt ctctccctct ctctctcttt ctttcttcct ctctctgcct tggagaggat
241 caagaaacga agggagggag gagaggagag gagaagggaa atcgagaaaa gtctgttctt
301 tggtttggct cgtgtggttc ttgagagctg ctgtttggaa aatctctgca cctgttgctg
361 accacttgct tcaattgttg aaagagatga acagcacctg agatgctatt gccagacatc
421 aattgataaa gagcacatct tcagtaatgc aaggacagaa gaactctgtt gagcagcttg
481 ctgatgtgtt tggatttgac catgcatcca gttcaggaaa ccctgtcatg gatcaacaag
541 gatattggaa caacattctt ggttcagtgg agtcacataa ccttcaaggt tatcaggtga
601 accgtagtga tggaactatt ccctatggaa acggtgtgca tcaaaatggc acttttttag
661 gtttttggga atcaggcgaa gcaagtgcaa gtggcagttc actacatttt gggggctcta
721 atgagatcaa agctgagcaa cgtaatatcg gtggtggcct aaggattggt gaaaggcgct
781 tggtagctga gcgcaacctt tctttggata atgttgatat aggccttaac atcaatggta
841 atgatctatc tggtgaaaat tcaaatgtga atggtgcttc acaaggctct gaactacatg
901 gtggctgctc tcatactggt tcaaatggtc aagcctctga gctgagatta catccataca
961 ggacattcat attaggtgca gatcaacctg agccttttaa ttctttgaat ggcagtgaaa
1021 atcctttagg tgatttttcc ttgatgccag aaggcattga tcagcgacca ggcagttccc
1081 tggatggccg ccggctggca tgcaagagga aaaatataga aggagttaat gggcagtgct
1141 cggcaggtgc tagcactagt ttttcccaca ggaacgatag tattttccat aacattgctt
1201 cttcgagtca taatccctct cctagtacaa atttaccctc tcctaattgt ctgttggttc
1261 caagcactct tgatgaacaa ctcccgcgtt atggagctac tacagctgga ttgtcatcta
1321 gtagctatga tcctagtgga ggcaataaca attcaggagg ctcacaaaga agttttcggc
1381 caagaactag cctggctcaa catattggcc cctatggtgt gtggccatct tcaagtacta
1441 tcagacattc cagtggtcag tagcctgaac tttcaatacc agcatccaat gaatgtcgtt
1501 cctggcattc cacagatgtc acaccggttc actggtccag gggcctcatc atcaagaaca
1561 ggcaatttgg agaacagaat tattggtagt gaggaattta gcgcgaggaa tgtagtggct
1621 accagcttcc ctgatgcagt tcctccggcc gcactagaca tgaggcattt gataccagaa
1681 ccatctagtt ggaatgtaga tggcagagct actaccattc caggaaatgt tccttcttca
1741 tcgagagcta ataccaattc gatggttaat ccaccagcag gctctccatt tattgcccat
1801 caaaacttgc atagacgtaa tcctcgtaat ttgtcagagg agataagtcg tttatctgga
1861 gctcttcgtg gccatcagca cccacgccta aggtccggtt ttctgttaga acgacaaggt
1921 gatggtgttt ggggtgttcc gttgtcaact aggagcaggg aaggaagaag attaattgag
1981 atccggaacg cgcttgaaat gattcacaga ggggaaaatg taagatttga gtccattttc
2041 tatggtggag tcgacattca tgacagacac agggatatgc gccttgacat agacaacatg
2101 tcttatgagg agctattggc actggaagaa agaataggca atgttagcac tggcctcagt
2161 gaggaagaag tgacaaagct cctaaagcaa aggaaattct catcatggag gttggaagca
2221 tctgtggaag aagagccatg ctgtatctgc caggaagagt atgttgatgg ggatgatctc
2281 gggacactgg actgtggaca tgacttccat gttggatgcg tcaggcaatg gctggttgtg
2341 aagaacacct gtcccatatg caaaaatact gctctgaagt cttagaaaaa gcacagggca
2401 gtaaacactg tgtgcttgtt cgatcgcaag atcgtttagt gattcatatt accgtgccgt
2461 tttttgatta gaaatttttt ttgccattga cctacaaatt tgattaaaaa aaaaggtaaa
2521 agaactggtc cctgcaaact gccccctcct gcagtaaata atccctggaa tctgtcgctc
2581 tgcattcaac tgaatattta tggctggtat attggatgat ggctcaatat ttttttc
//