LOCUS AK067741 2158 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013116N13, full insert
sequence.
ACCESSION AK067741
VERSION AK067741.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2158)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2158
/clone="J013116N13"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2158
/db_xref="Osa1:LOC_Os03g61130"
/note="(Rice Genome Annotation Project) hydrolase, acting
on ester bonds, putative, expressed"
/note="mapping to R03-TIGRv4S1-001730F (Chr.3: short
arm=34663272, long arm=34666212, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 490 a 612 c 573 g 483 t
ORIGIN
1 gtgaggagac acgcaaaagc aaagcaaacc actcgccgaa caccaactcc tcgccgccgc
61 cgccgaggag gaggaggagg gagcgagctt gacgccggcg ccatggcggg cgggggaggt
121 agggagcggc gcggcggggg gaggctgctc gtcggggtgc tgctcctgac gctggtggtg
181 tccgggcact gcctggagag cacgcaccac cgcgggctga agcggcggcg gcggaagcac
241 gagatccact cgccgatcaa gacggtggtg gtggtggtga tggagaatcg gagcttcgac
301 cacatcctcg ggtggctcag ccgcacccgc cccgacatcg acgggctcaa cggcacgcaa
361 tccaaccgcc tcaacgcctc cgacccttcc tccccggaga tcttcgtcac cgacgaggcc
421 ggctacgtcg actccgaccc cggccacggc ttcgaggaca tccgcgagca gatcttcggc
481 tccgccgaca cctccgccgt gccggccccc atgtccggct tcgcccagaa cgcccgcggg
541 atgggcctcg gcatgccgca gaacgtcatg agcgggttca agccggagtc cgtgccggtc
601 tacgccgccc tcgccgacga gttcgccgtg ttcgaccggt ggttcgcctc cgtgcccacc
661 tccacccagc ccaatcgcct ctacgtccat tccgcgacct cccatggcct caccttcaat
721 gcccgcaagg acctcatcca tggcttcccg cagaagacca tcttcgatag cctcgaggag
781 aacggcttgt cctttggcat ctactaccag aacatcccgg ccacgctctt ctaccagagc
841 ctccgccgcc tcaagcgcct cgtcaagttc caccagtaca gcctcaagtt caagcttcac
901 gccaagtggg gaaagctgcc gaattacgcg gtgattgagc agaggtactt cgattgcgag
961 atgttccctg caaacgatga ccacccctcg cacgacgtag cgagggggca gaggttcgtc
1021 aaggaggtgt atgagacgct gcgagcgagt ccgcagtgga acgagactgc tctgatcatc
1081 acctatgatg agcatggtgg attctatgac catgtgccta cgccggttgt cggggttcca
1141 cagcctgatg gaattgttgg ccctgatcct tactacttca agtttgatcg gcttggagtg
1201 cgcgtgcctt ctttccttat ctcaccatgg atcgagaagc gcactgtgat ccatgaacca
1261 aatgggccgc aggactcctc acaatatgag cactcatcca tccctgcaac agtaaagaag
1321 ctatttaatt tacattctaa cttcctgaca aagagggatg catgggctgg gacctttgag
1381 aactacttca aaatccggaa aacacccaga actgattgtc cagagaaact cccagaggtc
1441 acaaagtctc tgcaaccgtt tggccctaag gaagattcat ctctgtcaga gtttcaagtg
1501 gagttgattc agcttgcttc tcagctcaat ggtgaccatg tactcaacac ctacccagat
1561 attggcagga ctatgactgt gggtgaagca aaccgctatg cagaggatgc tgttgctaga
1621 tttttggaag ctggcaggat tgctctaaga gctggtgcaa atgaatctgc tttggtcacc
1681 atgaggcctg cactcaccag cagagcctca ccgtcctctg atttatcatc tgaactctga
1741 tggattgttc tcagatttat ccacaattct gcatcatgat ttgcaccgcg tcagcttttg
1801 gttgatgaga actcgtacaa tgtgctaaga aaacataggt aggttggtgt acggcaaagt
1861 gtgctagtat tatgtaattg atagatctta aacatggctt tgtacataga catcatgata
1921 cttgatatct caagctttta cttcagctgt cctctgataa cgctgagata tcagctcaga
1981 agtatctgat aagatcctac tctggataag ctggagaggg aatttgtaaa ccatcgatat
2041 tcagctctgt acctgcttat tcagcagttg aactgcactt ctgatgaaat actttatgta
2101 caccagttat agtggtattg aaagatttgg cccgtatgaa tgtatgatgt ttgtaccg
//