LOCUS AK067671 2378 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013116J20, full insert
sequence.
ACCESSION AK067671
VERSION AK067671.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2378)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2378
/clone="J013116J20"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2378
/db_xref="Osa1:LOC_Os06g03560"
/note="(Rice Genome Annotation Project) oligopeptide
transporter 9, putative, expressed"
/note="mapping to R06-TIGRv4S1-000068R (Chr.6: short
arm=1370852, long arm=1374161, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 505 a 621 c 575 g 677 t
ORIGIN
1 ggctgactga tgatgctcgt gcacagtgcg accatcgacg tcgggcagct cgccggagaa
61 tggagaggag gagaactcac cggtggagct ggtggcgctg acggtgccag tgagcgacga
121 gccggagacg ccggtgctga cgttcaggat gtgggtgctg gggacggcgt cgtgcgcggt
181 gctctccttc cttaaccagt tcttctggta ccgcaaggag ccgctcacca tcaccgccat
241 ctccgcgcag atcgccgtcg tgccgctcgg ccgcctcatg gcggcgacgc tgccggagca
301 cgccttcttc cgtggccggc cgtgggagtt cacgcttaat ccggggccgt tcaatgtcaa
361 ggagcacgtg ctcatcacca tcttcgccaa ctccggcgcc ggcaccgtct atgccatcca
421 cgtcatcacc ggcgtccgtg tcttctacgg gaaaaccctc tccttcttca tctccctcct
481 tgtcgtcctc acaacacaga tgctggggtt cggctgggcg ggaatattcc ggcgttatct
541 tgttgagccg gcgtctatgt ggtggccatc caacctagtg caggtctctc tgttcagcgc
601 acttcatgag aaggaagcac ggagaaaagg tggcttgacg cggaaccagt tcttcctggt
661 ggcattcgtc tgcagctttg catactacat cttcccaggc tacctattcc agatgctcac
721 ctccctctcc tggatctgct gggtcttccc cagctctgtc cttgcccaac agcttggttc
781 aggtctccga ggcctcggcg ttggtgcaat cggtctcgac tggtcatcta tctcctccta
841 ccttgggagc cctcttgcta gcccatggtt tgccactgta aatgttggtg ttggcttctt
901 catcgtcatg tacataatca caccaattgc atactggttt aatttctaca aggcacaaaa
961 tttccccata ttttctgatg gcctcttcac ctcgactggg caaaaataca atgtatcaag
1021 cattgttgac tcccatttcc attttgacac caaggcctat gagaagaatg ggccactata
1081 cctcagtact tcccttcttg tcacatacgg tgttggtttt gcaacccttg ctgcaacaat
1141 tgttcatgct ctcctcttcc atggaaggtc cctgagtggt ggttcatatg catccttatt
1201 gctaacatcg gaacgaccat atttgcttgt gaatactaca atgaggaact ccaattgccc
1261 tggtggggtg ttttgtttgc atgctccatt gcctttttct tcaccctccc aatagggata
1321 atcaaagcaa caacaaatca gactccaggc ctgaatgtca tcacggagta cattattggg
1381 tatctgtacc ctggacgacc cgttgcaaat atgtgcttca aggtatatgg ttacatcagc
1441 atgaaacaag ctttggcatt tcttgaagat tttaagctgg gtcactacat gaagattcca
1501 ccgaggacaa tgtttatggc tcaggtggtg ggaacttcaa ttgcagcatt tgtgtatatt
1561 ggcacagcat ggtggctaat ggagacaatc cccaacatct gcaacactga gctcctcccg
1621 tcagatagcc cttggacctg cccaggtgac catgtattct atgatgcatc agtcacatgg
1681 ggacttatta gcccgcgcag gatatttggg gacttaggca cttattcagc tctaaattgg
1741 ttctttttgt gtggagctat tgcccctcta cttgtctggt ttgcacacaa gacattccca
1801 ggccagaact ggatcttact catcaagacg cctgtactaa ttggtgccac cttccagatg
1861 cctcctgcta ctgccgtcaa ctacacgact tggatacttg ttgggttctt gtcaggttat
1921 gtggtctata gatatcgacg tgattggtgg gagagacaca attatctgct ttcaggtgca
1981 ctggatgctg gtttggcttt catggcggtc ttaatttact tgtgcttagg cttggaggac
2041 atcagtctga actggtgggg aaatgacttg gatgggtgtc ctttggcttc ttgtcccact
2101 gctaaaggta tagttgtcaa gggatgtgca gtctatactt gaggatctcc tattgcttct
2161 tgtcccactg ctacagtgtt acccagacct ccatgggtgc aagccaatat gattagatct
2221 aatttgaccc ttgtcatcta taaacatcag tagaaccagc tttgattcat agctggaaat
2281 tagcaatgta gtttcagggt tagtggtcat aacttgtatc ctatcagtat tctcgaaaaa
2341 acttgtatcc taccaaacaa gttaaatttt gatctctg
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