LOCUS AK067653 3306 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013112I11, full insert
sequence.
ACCESSION AK067653
VERSION AK067653.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3306)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3306
/clone="J013112I11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3306
/db_xref="Osa1:LOC_Os01g52560"
/db_xref="RAP-DB:Os01g0724500"
/note="(RAP Annotation release2) Similar to ABC
transporter (PDR5-like) isolog (PDR1 ABC transporter)"
/note="(Rice Genome Annotation Project) ATPase, coupled
to transmembrane movement of substances, putative,
expressed"
/note="mapping to R01-TIGRv4S1-001326F (Chr.1: short
arm=30544412, long arm=30549914, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 876 a 678 c 694 g 1058 t
ORIGIN
1 tttgctgatt tatctttaac tctggcaagg ctcccggtat tctacaaaca tagggacttc
61 ctgttttata ggccatggac ttttgcactt ccaaatgttc tcgtgagaat ccctagctcc
121 ctgtttgagt cgataatttg ggttgcaata acctactaca ccatggggtt tgcccctgaa
181 gctagcaggt tcttcaaaca cctgcttgta gtcttcatgc ttcagcagat ggctgcagga
241 ctgttcagag tcaccgctgg gttatgcagg actgttgtgg taacgaacac tgcagggtct
301 cttgcagttc tgatcatgtt tgtgcttgga ggattcatcc taccaaaaga tgcaatccct
361 aaatggtggg tgtgggctta ctggtgttca ccccttactt atgcatacat tgccttttct
421 tccaatgaaa tgcattctcc aaggtggatg gacaaatttg tacctgatgg aaagagattg
481 ggagtggcag ttctagaaaa ttcaggtgtc ttcaccaata aggaatggta ctggattgca
541 actggcgccc ttctagggtt caccattctg ttcaacgtgt tattctcgct atcacttatg
601 tacctgaacc gtaagtagct acactgtact tagtaataac ctgttatgag ttgcatctga
661 caacagatta tttccttaac ttcgccgatt ggccttttca agtgagcagg tagtgcaatt
721 agtatagtat tacatatata gtgcctttgt atgaatgttc tctgcaattc caaatattga
781 ttcatgtaga tattgaaaat ctaaaacttt taacttcata aatttaaaat catagatgcc
841 caaattataa gattgtattc tgcaagccca attaaattct ggattcttga ttccattttt
901 tatttctttt acagttcttg ggaagtattt ctttcattag cacacttctt tttttagata
961 cttctctcca gctatatacc taaaaagaat gttttggtca ttttgtcctt tcttatcagc
1021 tgtaaataaa tacatttgat acgtataata tatccaatgt ctgtgataaa taggtattgt
1081 ccttcaattt caatgacata tttttgacat tttgtaacgg ccatttattc tattccttga
1141 attagctgtt ggaaaaccac aatccatcct ccctgaagaa accgatagtc aggagaacat
1201 tcaggaagga aaaaacaagg cacatataaa acagataatt acagttgaaa caccagaacc
1261 tgtatccccg aactcaatta tcaccctgga taaggtgatt caacaattgc gtggatattc
1321 cgcaaacact tctgataggt cgcgctcata cattaatgct gctggcagaa ctgctccagg
1381 aagagggatg gttcttccat ttgaaccgct ctacatgtcc tttaatgaga taaattacta
1441 tgttgatatg cctttgagtc agggagtaac tgccgataag cttcaactgc tgtcagggat
1501 atctggagct tttcgacctg gtgttctgac tgctcttatg ggtgttagtg gggctggaaa
1561 gactaccctc atggatgtct tatctgggag aaagacaggt ggatatattg aaggggaaat
1621 ctatatatcg ggttacccaa agaaccaagc aacatttgct agaatatcag gctactgtga
1681 gcaaaatgac atccactccc cacagattac tgtaagggag tccctacttt tctctgcttt
1741 cctgcgcctg cctaaggagg tcaatgatca agaaaagaag atctttgtgg atgaagttat
1801 ggaactggtt gagcttactg gtctgaaaga tgctattgtg ggcctccctg gtgtgaatgg
1861 gctgtcaaca gaacaaagaa agaggctgac aatcgctgta gagcttgtgg caaacccctc
1921 aattatcttt atggatgaac caacttctgg tcttgatgca agagcggctg ctattgttat
1981 gagaactgta cgtaacactg tcaatactgg aagaaccgtt gtatgcacta ttcatcaacc
2041 aagcattgac atttttgaag cttttgatga gttgttgcta ctaaaaagag gaggccaggt
2101 tatatattct ggaccattgg gtacaaattc tcataaagtt gttgagtact ttgaggcaat
2161 tcctggagtc ccaaagatcg aagagaatcg caacccagct acatggatgc tggatgtaag
2221 ctcagctgca tcagaagttc gattggaaat tgattttgct gaatattaca ggtcatcgac
2281 tatgcaccag cgaaccaaag cattagtaaa agaactgagc aatccacctc ctggttccga
2341 tgacctctac ttccctagtc aatactcgca gagcaccttt aatcagttca agctctgcct
2401 ctggaaacaa tggtggactt actggagaag ccctgattat aaccttgtca ggattttctt
2461 tgcattattt actgctttaa tgttggggac tatattttgg agggttggtc acaagatgga
2521 gagttcaaaa gatctcttgg tcatcattgg atcaatgtat gctgccgtct tgtttgttgg
2581 ttttgagaat tctgtaactg ttcaacccgt tgttgctgtg gaaaggactg tattttacag
2641 agagcgggca gctggaatgt actcggctat accatatgct ctagctcagg ttgttgtgga
2701 gataccgtat gtgttcgttg agactgtcat ttacacactt attgtctacc caatgatgtc
2761 gttccaatgg acaccagcaa aattcttctg gttcttctat gtttcattct tcaccttcct
2821 ctatttcact tactatggca tgatgaacgt ctccgtatca ccaaaccttc aggttgcttc
2881 catattgggt gctgcctttt acaccctttt caatctcttt tcaggattct tcatcccaag
2941 accgaaaatc ccaaaatggt gggtttggta ctattggctt tgtccagtgg catggacagt
3001 atacggcctt attgtgtcac agtacggaga tgtggaggat tttatcacgg tccctggaca
3061 atctgatcag caagtcagac ctttcatcaa ggactatttt ggctatgacc cggacttcat
3121 gggcgtcgtg gctgcagtgc tggctggctt tactgtcttc ttcgctttta catatgctta
3181 ctccatcaga accttaaatt tccagcagag atagaaaatc ctgccatgta ttgctgtgtg
3241 ttgcagttca catgtaagat gtaacgctag ttttcaccca ggtatatatt ctatcttatt
3301 gattgc
//